Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01443 ATGGCTTCTCATTTTCTTCTTCTTCTTCTTCTTCTTCTTATTCCTTCTGTCTTTGTCGATGCCAAGAAAACTTACATTGTTCGTATGAAACATAATGCTCTGCCATCGGAGTATCTCACCCACCATGACTGGTACTCCGCTCATCTTCAATCTCTATCTTCATCTTCAACCTCCGATTCCCTTCTCTACACTTACACTTCCGCCTACCATGGCTTCGCTGCTTCTCTGGATTCAAATGAAGTAGAATTGCTCCGCCAATCCGATTCAGTTTTGGGTGTCTACGAAGACTCTGTTTACAATCTTCACACCACTCGCACTCCGGGATTCCTTGGTCTCAACTCCGATTTTGGGTTATGGGAAGGTCACAACACTCAGGATCTTAATCAAGCTTCTCACGATGTCATCATTGGGGTTCTCGATACTGGGATTTGGCCGGAATCGAAGAGCTTTGATGACACTGGAATGCCGGACATCCCATCACGGTGGCGTGGAGAATGTGAATCAGGACCCGATTTCAATCCTTCTCTCTGTAACAAGAAACTAATCGGAGCTCGTAGCTTCTCCAAGGGTTATCAAATGGCTTCCGGTGGTGGGTATTTCAGAAAACCTAGAGAAAACGAGTCGCCTCGAGATCAAGACGGACATGGAACGCACACAGCGAGCACAGCTGCTGGTTCACATGTGGCTAACGCGAGCTTACTTGGTTATGCAAGAGGCATTGCTAGAGGAATGGCTCCTCAAGCAAGAGTTGCTGCTTACAAGACTTGTTGGCCTACTGGTTGCTTCGGATCTGACATTCTCGCCGGTATGGATCGAGCGATATCCGACGGCGTCGATGTACTTTCACTCTCTTTAGGTGGTGGCTCTGCTCCCTATTACAGAGATACCATAGCAATTGGAGCATTTGCAGCCATGGAGAAGGGGGTTTTTGTTTCTTGCTCAGCTGGGAATAGTGGACCAAATAAGGCTTCTCTAGCCAATGTAGCACCGTGGATCATGACGGTCGGAGCCGGAACGCTCGACCGGGACTTCCCAGCTTATGTCCAGCTTGGAAATGGTAAACGCTTCACTGGAGTGTCGCTTTACAGTGGTCAAGGAATGGGGAATAAGGCAGTGGAATTGGTATACAACAAAGGAAGCAACACCTCCAGCAATATGTGCTTGCCGGGATCTCTCGACCCGGCGGTGGTTCGAGGGAAAGTGGTGGTTTGCGACCGAGGAATCAACGCCAGAGTAGAAAAGGGAGGAGTGGTGCGAGATGCAGGTGGGATTGGGATGATTCTTGCAAACACAGCAGCTAGTGGGGAGGAATTGGTGGCTGATAGTCACTTGCTGCCAGCCGTGGCGGTCGGGCGGAAAACCGGCGACTTGATCCGACAGTATGTTCGGTCAGCTTCGAATCCAACGGCTGTGCTGAGCTTTGGTGGGACAATTCTGAATGTCCGCCCATCTCCGGTGGTGGCGGCGTTTAGTTCTAGAGGACCCAACTTGGTAACTCCCCAAATCCTAAAGCCGGATGTTATTGGTCCTGGCGTTAATATCCTGGCTGCTTGGTCCGAGTCCATTGGACCTACCGGATTGGACAATGACAAAAGGAAAACTCAGTTCAATATCATGTCAGGAACTTCCATGTCTTGCCCACATATAAGTGGGTTGGCTGCATTGCTAAAGGCAGCTCATCCACAATGGAGTCCAAGTGCAATCAAATCCGCGTTAATGACAACCGCATACACACAGGACAACACCAACTCATCGCTCCGTGATGCAGCCGGAGGGGCGTTTTCCAATCCATGGGCTCATGGAGCTGGCCATGTTGATCCTCACAAAGCTCTATCCCCTGGCCTTCTATACGATATCTCGACTGATGATTACATTGCCTTCTTGTGCTCATTGGACTATGGGATCGATCATGTTCAAGCTATCGTGAAACGTTCGAACATAACTTGCTCTAGAAAGTTTGCCGATCCAGGACAACTTAACTACCCTTCGTTTTCAGTTGTGTTTGGGAGCAAGAGGGTTGTTCGGTACACTCGTATCGTCACCAATGTTGGCGCTGCAGGGTCGGTTTACGAAGTGGCTACTACTGCACCGTCTGTTGTGAAGGTGACTGTGAAACCTTCAAAACTTGTGTTCACTAAAGTTGGGGAGAGGAAGAGGTACACAGTTACGTTTGTGGCGAGTAGGGACGCTGCTCAAACGACGAGATTTGGGTTCGGTTCGATTGCGTGGAGCAATGACCAACACCAAGTTAGAAGCCCAGTGGCATTCGCTTGGACAAGGTTTTCCCATTCCTTCAACAAGCAAGGTGTGATGATCAGCAATCAGCAAAAGAGAATGATCATCTATGAGCAATCACCAAGTTGGGGAGAGTTAAAACTAATGTCGGCGCGGGTTGTGTGGGATGGTCAAGCGATCTTAGGAGGTTGCATTTTCTTCGAGAGGAGATGGGGTGGCGTTAGTTTTCTAGAATCTCAAGCTCTATTTAAAGGTCTAAAAATAGTCTATTAG 2508 48.8 MASHFLLLLLLLLIPSVFVDAKKTYIVRMKHNALPSEYLTHHDWYSAHLQSLSSSSTSDSLLYTYTSAYHGFAASLDSNEVELLRQSDSVLGVYEDSVYNLHTTRTPGFLGLNSDFGLWEGHNTQDLNQASHDVIIGVLDTGIWPESKSFDDTGMPDIPSRWRGECESGPDFNPSLCNKKLIGARSFSKGYQMASGGGYFRKPRENESPRDQDGHGTHTASTAAGSHVANASLLGYARGIARGMAPQARVAAYKTCWPTGCFGSDILAGMDRAISDGVDVLSLSLGGGSAPYYRDTIAIGAFAAMEKGVFVSCSAGNSGPNKASLANVAPWIMTVGAGTLDRDFPAYVQLGNGKRFTGVSLYSGQGMGNKAVELVYNKGSNTSSNMCLPGSLDPAVVRGKVVVCDRGINARVEKGGVVRDAGGIGMILANTAASGEELVADSHLLPAVAVGRKTGDLIRQYVRSASNPTAVLSFGGTILNVRPSPVVAAFSSRGPNLVTPQILKPDVIGPGVNILAAWSESIGPTGLDNDKRKTQFNIMSGTSMSCPHISGLAALLKAAHPQWSPSAIKSALMTTAYTQDNTNSSLRDAAGGAFSNPWAHGAGHVDPHKALSPGLLYDISTDDYIAFLCSLDYGIDHVQAIVKRSNITCSRKFADPGQLNYPSFSVVFGSKRVVRYTRIVTNVGAAGSVYEVATTAPSVVKVTVKPSKLVFTKVGERKRYTVTFVASRDAAQTTRFGFGSIAWSNDQHQVRSPVAFAWTRFSHSFNKQGVMISNQQKRMIIYEQSPSWGELKLMSARVVWDGQAILGGCIFFERRWGGVSFLESQALFKGLKIVY 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29980684 29984194 - ClCG03G015030.1 Cla03g01443 269943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01443 835 ProSitePatterns Serine proteases, subtilase family, serine active site. 541 551 IPR023828 -
Cla03g01443 835 SUPERFAMILY Protease propeptides/inhibitors 23 100 - -
Cla03g01443 835 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 18 102 IPR037045 -
Cla03g01443 835 MobiDBLite consensus disorder prediction 195 222 - -
Cla03g01443 835 CDD Peptidases_S8_3 99 577 IPR034197 -
Cla03g01443 835 PRINTS Subtilisin serine protease family (S8) signature 131 150 IPR015500 -
Cla03g01443 835 PRINTS Subtilisin serine protease family (S8) signature 211 224 IPR015500 -
Cla03g01443 835 PRINTS Subtilisin serine protease family (S8) signature 540 556 IPR015500 -
Cla03g01443 835 Pfam Subtilase family 132 582 IPR000209 GO:0006508|GO:0008236
Cla03g01443 835 ProSiteProfiles Serine proteases, subtilase domain profile. 115 611 - -
Cla03g01443 835 Gene3D - 341 479 - -
Cla03g01443 835 Pfam PA domain 373 457 IPR003137 -
Cla03g01443 835 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 15 759 IPR045051 -
Cla03g01443 835 Gene3D - 628 758 - -
Cla03g01443 835 SUPERFAMILY Subtilisin-like 101 615 IPR036852 GO:0004252|GO:0006508
Cla03g01443 835 CDD PA_subtilisin_like 347 470 - -
Cla03g01443 835 Gene3D Peptidase S8/S53 domain 133 624 IPR036852 GO:0004252|GO:0006508
Cla03g01443 835 Pfam Peptidase inhibitor I9 24 102 IPR010259 -
Cla03g01443 835 Pfam Fibronectin type-III domain 658 755 IPR041469 -
Cla03g01443 835 PANTHER CUCUMISIN-RELATED 15 759 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01443 - - - csv:101209781 1416.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01692 Cla-Chr1:31854378 Cla03g01443 Cla-Chr3:29980684 0 dispersed
Cla03g01443 Cla-Chr3:29980684 Cla08g01611 Cla-Chr8:28719089 0 dispersed
Cla08g01620 Cla-Chr8:28818168 Cla03g01443 Cla-Chr3:29980684 4.18E-173 dispersed
Cla07g00130 Cla-Chr7:1498129 Cla03g01443 Cla-Chr3:29980684 0 transposed
Cla11g01151 Cla-Chr11:24062722 Cla03g01443 Cla-Chr3:29980684 1.82E-96 transposed
Cla01g00326 Cla-Chr1:3538905 Cla03g01443 Cla-Chr3:29980684 0 transposed
Cla03g01443 Cla-Chr3:29980684 Cla09g00096 Cla-Chr9:943443 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g71 . . Bda01g01993 . Bpe01g00619 . . . Cmo10g00800 Cmo11g00748 . . . . . Cpe04g01018 Cpe18g00316 Bhi02g01790 . . . Hepe09g0933 . . . . . . . . . . . . . Lsi06g00340 . . Cme02g00307 . Blo14g00573 . . . . Bma01g00262 . . . . Cma10g00769 Cma11g00735 . . . . . . . . . . . Cla03g01443 Cam03g1524 Cec03g1564 Cco03g1557 Clacu03g1549 Cmu03g2104 Cre03g1776 . Csa01g02995 Chy02g01279 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla07g00628 . 17 766 Subtilisin-like Serine Gene Family AT1G01900 56.6 3.9e-232 801.6
Cla07g00626 . 22 795 Subtilisin-like Serine Gene Family AT1G01900 53.4 9.2e-226 780.4
Cla07g00130 . 31 772 Subtilisin-like Serine Gene Family AT1G04110 68.0 1.7e-312 1068.5
Cla05g01608 . 55 825 Subtilisin-like Serine Gene Family AT1G20150 52.5 1.4e-221 766.5
Cla05g01608 . 58 557 Subtilisin-like Serine Gene Family AT1G20160 61.5 7.9e-171 597.4
Cla08g01069 . 91 519 Subtilisin-like Serine Gene Family AT1G20160 50.9 3.7e-112 402.5
Cla10g00384 . 10 164 Subtilisin-like Serine Gene Family AT1G20160 55.7 1.7e-40 164.5
Cla01g02485 . 9 838 Subtilisin-like Serine Gene Family AT1G30600 65.2 1.5e-311 1065.4
Cla07g00778 . 121 840 Subtilisin-like Serine Gene Family AT1G32940 54.6 5.4e-228 787.7
Cla07g00778 . 121 840 Subtilisin-like Serine Gene Family AT1G32950 54.2 1.8e-223 772.7
Cla07g00778 . 97 840 Subtilisin-like Serine Gene Family AT1G32960 54.4 5.6e-231 797.7
Cla10g00384 . 7 159 Subtilisin-like Serine Gene Family AT1G32970 50.3 3.3e-39 160.6
Cla01g00962 . 54 791 Subtilisin-like Serine Gene Family AT1G62340 57.6 5.2e-243 837.8
Cla10g00384 . 7 159 Subtilisin-like Serine Gene Family AT1G66210 50.6 4.4e-39 160.2
Cla02g00312 . 38 751 Subtilisin-like Serine Gene Family AT2G04160 60.1 8.8e-261 896.7
Cla10g00388 . 14 770 Subtilisin-like Serine Gene Family AT2G04160 54.9 9.1e-242 833.6
Cla01g01132 . 32 702 Subtilisin-like Serine Gene Family AT2G04160 53.5 1.2e-206 716.8
Cla10g00384 . 4 164 Subtilisin-like Serine Gene Family AT2G04160 64.8 8.2e-57 219.2
Cla01g01131 . 51 178 Subtilisin-like Serine Gene Family AT2G04160 57.0 1.2e-36 152.1
Cla03g01443 . 21 761 Subtilisin-like Serine Gene Family AT2G05920 73.6 0.0e+00 1102.8
Cla01g01692 . 22 761 Subtilisin-like Serine Gene Family AT2G05920 55.6 3.8e-232 801.6
Cla08g01611 . 83 818 Subtilisin-like Serine Gene Family AT2G05920 55.9 3.5e-222 768.5
Cla05g00825 . 27 772 Subtilisin-like Serine Gene Family AT2G05920 51.9 3.2e-215 745.3
Cla09g00096 . 30 760 Subtilisin-like Serine Gene Family AT2G05920 53.6 1.2e-214 743.4
Cla02g01160 . 31 764 Subtilisin-like Serine Gene Family AT2G05920 51.5 1.9e-207 719.5
Cla09g00121 . 28 781 Subtilisin-like Serine Gene Family AT2G05920 51.3 4.1e-202 701.8
Cla11g01151 . 7 871 Subtilisin-like Serine Gene Family AT2G19170 76.4 0.0e+00 1315.8
Cla09g00096 . 8 767 Subtilisin-like Serine Gene Family AT3G14067 63.9 5.3e-282 967.2
Cla01g01692 . 9 761 Subtilisin-like Serine Gene Family AT3G14067 54.1 6.0e-225 777.7
Cla03g01443 . 20 758 Subtilisin-like Serine Gene Family AT3G14067 54.1 9.0e-221 763.8
Cla08g01611 . 54 818 Subtilisin-like Serine Gene Family AT3G14067 50.8 1.9e-210 729.6
Cla09g00121 . 9 787 Subtilisin-like Serine Gene Family AT3G14067 50.3 4.5e-204 708.4
Cla10g00384 . 12 161 Subtilisin-like Serine Gene Family AT3G14067 50.7 2.1e-36 151.4
Cla09g00121 . 31 789 Subtilisin-like Serine Gene Family AT3G14240 77.0 0.0e+00 1207.2
Cla02g01160 . 32 772 Subtilisin-like Serine Gene Family AT3G14240 58.8 8.0e-246 847.0
Cla01g01692 . 27 757 Subtilisin-like Serine Gene Family AT3G14240 52.5 7.8e-217 750.7
Cla09g00096 . 29 758 Subtilisin-like Serine Gene Family AT3G14240 51.7 3.4e-212 735.3
Cla05g00825 . 28 768 Subtilisin-like Serine Gene Family AT3G14240 50.1 1.1e-210 730.3
Cla03g01443 . 24 754 Subtilisin-like Serine Gene Family AT3G14240 51.1 7.1e-210 727.6
Cla08g01611 . 85 817 Subtilisin-like Serine Gene Family AT3G14240 50.5 3.2e-202 702.2
Cla10g00384 . 2 163 Subtilisin-like Serine Gene Family AT3G14240 51.8 2.0e-39 161.4
Cla10g00384 . 12 166 Subtilisin-like Serine Gene Family AT3G46840 52.6 3.3e-39 160.6
Cla07g00629 . 9 568 Subtilisin-like Serine Gene Family AT4G00230 58.4 5.9e-188 654.4
Cla07g00632 . 12 519 Subtilisin-like Serine Gene Family AT4G00230 54.9 3.7e-166 582.0
Cla10g00384 . 15 161 Subtilisin-like Serine Gene Family AT4G00230 55.1 5.7e-42 169.5
Cla07g00778 . 121 838 Subtilisin-like Serine Gene Family AT4G10510 53.2 2.0e-222 769.2
Cla07g00778 . 98 838 Subtilisin-like Serine Gene Family AT4G10520 54.9 2.1e-230 795.8
Cla07g00778 . 98 838 Subtilisin-like Serine Gene Family AT4G10530 52.6 8.9e-218 753.8
Cla07g00778 . 76 840 Subtilisin-like Serine Gene Family AT4G10540 53.5 4.9e-235 811.2
Cla07g00778 . 121 840 Subtilisin-like Serine Gene Family AT4G10550 53.4 2.6e-222 768.8
Cla01g02485 . 12 838 Subtilisin-like Serine Gene Family AT4G20430 68.2 0.0e+00 1138.3
Cla03g00485 . 1 298 Subtilisin-like Serine Gene Family AT4G21320 74.6 1.0e-129 459.9
Cla07g00778 . 93 837 Subtilisin-like Serine Gene Family AT4G21650 50.4 5.2e-205 711.4
Cla01g01234 . 1 722 Subtilisin-like Serine Gene Family AT4G26330 56.2 1.1e-233 806.6
Cla11g01151 . 10 871 Subtilisin-like Serine Gene Family AT4G30020 76.4 0.0e+00 1310.4
Cla02g01160 . 15 772 Subtilisin-like Serine Gene Family AT4G34980 74.5 0.0e+00 1151.7
Cla09g00121 . 16 789 Subtilisin-like Serine Gene Family AT4G34980 53.1 6.1e-230 794.3
Cla01g01692 . 1 757 Subtilisin-like Serine Gene Family AT4G34980 51.2 8.3e-211 730.7
Cla05g00825 . 9 771 Subtilisin-like Serine Gene Family AT4G34980 50.8 1.8e-210 729.6
Cla03g01443 . 1 754 Subtilisin-like Serine Gene Family AT4G34980 50.4 3.8e-208 721.8
Cla10g00387 . 65 307 Subtilisin-like Serine Gene Family AT4G34980 52.0 7.5e-63 239.2
Cla04g00975 . 4 564 Subtilisin-like Serine Gene Family AT5G03620 58.5 4.5e-185 644.8
Cla07g00629 . 5 566 Subtilisin-like Serine Gene Family AT5G03620 51.5 1.9e-146 516.5
Cla10g01818 . 16 276 Subtilisin-like Serine Gene Family AT5G03620 55.0 2.5e-82 303.5
Cla10g00384 . 11 159 Subtilisin-like Serine Gene Family AT5G03620 55.0 6.6e-43 172.6
Cla10g01819 . 49 157 Subtilisin-like Serine Gene Family AT5G03620 70.8 1.3e-38 158.3
Cla06g00853 . 291 1050 Subtilisin-like Serine Gene Family AT5G19660 79.8 0.0e+00 1271.1
Cla01g02485 . 34 612 Subtilisin-like Serine Gene Family AT5G44530 70.8 7.9e-244 840.1
Cla01g02353 . 23 834 Subtilisin-like Serine Gene Family AT5G45650 54.9 3.2e-242 835.1
Cla05g00825 . 27 770 Subtilisin-like Serine Gene Family AT5G51750 73.8 0.0e+00 1156.7
Cla01g01692 . 13 761 Subtilisin-like Serine Gene Family AT5G51750 52.0 8.1e-230 793.9
Cla08g01611 . 61 818 Subtilisin-like Serine Gene Family AT5G51750 52.1 3.9e-224 775.0
Cla03g01443 . 19 758 Subtilisin-like Serine Gene Family AT5G51750 51.4 4.5e-220 761.5
Cla10g00384 . 14 161 Subtilisin-like Serine Gene Family AT5G58830 53.0 3.3e-36 150.6
Cla10g00384 . 14 161 Subtilisin-like Serine Gene Family AT5G58840 51.7 3.9e-37 153.3
Cla10g00384 . 14 161 Subtilisin-like Serine Gene Family AT5G59090 51.0 2.6e-36 151.0
Cla05g02221 . 50 747 Subtilisin-like Serine Gene Family AT5G59190 50.2 1.4e-188 656.8
Cla01g00097 . 404 1101 Subtilisin-like Serine Gene Family AT5G59190 50.1 4.9e-186 648.3
Cla10g01818 . 32 276 Subtilisin-like Serine Gene Family AT5G59190 50.2 2.8e-56 217.2
Cla10g00384 . 11 161 Subtilisin-like Serine Gene Family AT5G59190 53.3 8.4e-37 152.5
Cla02g00312 . 45 751 Subtilisin-like Serine Gene Family AT5G59810 55.8 4.4e-236 814.7
Cla10g00388 . 11 770 Subtilisin-like Serine Gene Family AT5G59810 54.6 2.9e-235 812.0
Cla01g01132 . 33 703 Subtilisin-like Serine Gene Family AT5G59810 59.5 9.6e-231 797.0
Cla10g00384 . 5 164 Subtilisin-like Serine Gene Family AT5G59810 64.0 3.5e-55 213.8
Cla01g01131 . 52 185 Subtilisin-like Serine Gene Family AT5G59810 57.4 1.2e-39 162.2
Cla01g01692 . 8 762 Subtilisin-like Serine Gene Family AT5G67360 72.1 0.0e+00 1102.4
Cla08g01611 . 59 819 Subtilisin-like Serine Gene Family AT5G67360 64.9 1.4e-290 995.7
Cla03g01443 . 24 759 Subtilisin-like Serine Gene Family AT5G67360 56.3 2.9e-232 802.0
Cla09g00096 . 8 759 Subtilisin-like Serine Gene Family AT5G67360 56.1 3.0e-229 792.0
Cla05g00825 . 11 769 Subtilisin-like Serine Gene Family AT5G67360 53.6 9.6e-228 786.9
Cla09g00121 . 9 784 Subtilisin-like Serine Gene Family AT5G67360 51.6 1.4e-210 729.9
Cla02g01160 . 13 767 Subtilisin-like Serine Gene Family AT5G67360 51.4 9.1e-210 727.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005941 3 1 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g01443 Cla_Chr03 FPKM 13.932559 15.338873 14.904554 16.206354 18.739588 20.789417 18.116585 15.92668 15.636951 14.846445