Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01458 ATGAGCGCCAGAAGTATGTTTCCCTTCACATCATCTCAGTGGCAGGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCTGGCATTCCTATACCTCCTGATCTTCTTTTCGGTATTAAAAGAAGTACCTTGGACTCTACTTTCACTTCTAAGTTCTTCCCCCACCATCCTCAACATGTTGGATGGAACTATTTGCAGATGAGTTTGGGGAGGAAAATAGACCCAGAACCAGGGAGGTGTAGGAGAACTGATGGGAAAAAGTGGAGATGCTCAAAAGAAGCATATCCAGATTCGAAATACTGTGAGAGACACATGCATAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACAACAGCAACAAACGACTTAAACCACCACTCAAATCCAACATTTTCTTCCTTAAAGAACAACTCGTCGTTACTCTCCTATCGGCCCTTCCCCGGTCATCGAATATCTTCAACTCCTAATGGGAATGGCATATCAACCAAAGACACCAATACCCTCTTGCTTCTGGAACCTGGTTCTTACTCGGACAGAAGCCCAGATTACAGAAGTAGGTACACTTATGGGCTAAAGGAGGAAGTGGATGAACATGTTTTCTTCTCACAAGAACCATCTGAAGCTACTGGGAGAGCTGATTACTCTGCTTCGTCCATAGCTAATTCTCTGCAACTGACACCACTAACGATGAGTTGTTCTTCTCTATACCCAAAACAGAGCAATAGCTCCTCTTTGCAGAGTGATCAATCATGTTATCAGCTTCATCAGAGCCTCAAAGACCCTTTGACGCAACAAAAGAGAGATGAATCACAGAAGACCGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGAAAGAGGATCATGGCTTGAGTTCGATGAAAAATCGTCAAATACTAGCTCAGTTTCCACCACTCGGCTCTCAATTTCCATTCCCACAGCTTCCAACGACTTACCCATTTTCAGATCCAAAAACCCTTAG 999 43.24 MSARSMFPFTSSQWQELEHQALIFKYMVSGIPIPPDLLFGIKRSTLDSTFTSKFFPHHPQHVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDLNHHSNPTFSSLKNNSSLLSYRPFPGHRISSTPNGNGISTKDTNTLLLLEPGSYSDRSPDYRSRYTYGLKEEVDEHVFFSQEPSEATGRADYSASSIANSLQLTPLTMSCSSLYPKQSNSSSLQSDQSCYQLHQSLKDPLTQQKRDESQKTVHRFFDEWPPKERGSWLEFDEKSSNTSSVSTTRLSISIPTASNDLPIFRSKNP 332
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 30119657 30121280 + ClCG03G015180.1 Cla03g01458 269958
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01458 332 PANTHER - 5 319 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cla03g01458 332 Pfam WRC 77 118 IPR014977 -
Cla03g01458 332 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Cla03g01458 332 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cla03g01458 332 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cla03g01458 332 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cla03g01458 332 PANTHER GROWTH-REGULATING FACTOR 6 5 319 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cla03g01458 Cla11g00136 CCT
Cla03g01458 Cla11g00136 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01458 Cla-Chr3:30119657 Cla08g01639 Cla-Chr8:29008933 6.98E-40 dispersed
Cla10g01826 Cla-Chr10:34203610 Cla03g01458 Cla-Chr3:30119657 9.05E-39 transposed
Cla11g00136 Cla-Chr11:1698303 Cla03g01458 Cla-Chr3:30119657 1.39E-105 wgd
Cla03g01458 Cla-Chr3:30119657 Cla07g01338 Cla-Chr7:30595404 3.88E-70 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60848 PF08879 WRC 1.10E-20 No_clan Cla TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01458 - - csv:101207344 587.03