Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01458 ATGAGCGCCAGAAGTATGTTTCCCTTCACATCATCTCAGTGGCAGGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCTGGCATTCCTATACCTCCTGATCTTCTTTTCGGTATTAAAAGAAGTACCTTGGACTCTACTTTCACTTCTAAGTTCTTCCCCCACCATCCTCAACATGTTGGATGGAACTATTTGCAGATGAGTTTGGGGAGGAAAATAGACCCAGAACCAGGGAGGTGTAGGAGAACTGATGGGAAAAAGTGGAGATGCTCAAAAGAAGCATATCCAGATTCGAAATACTGTGAGAGACACATGCATAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACAACAGCAACAAACGACTTAAACCACCACTCAAATCCAACATTTTCTTCCTTAAAGAACAACTCGTCGTTACTCTCCTATCGGCCCTTCCCCGGTCATCGAATATCTTCAACTCCTAATGGGAATGGCATATCAACCAAAGACACCAATACCCTCTTGCTTCTGGAACCTGGTTCTTACTCGGACAGAAGCCCAGATTACAGAAGTAGGTACACTTATGGGCTAAAGGAGGAAGTGGATGAACATGTTTTCTTCTCACAAGAACCATCTGAAGCTACTGGGAGAGCTGATTACTCTGCTTCGTCCATAGCTAATTCTCTGCAACTGACACCACTAACGATGAGTTGTTCTTCTCTATACCCAAAACAGAGCAATAGCTCCTCTTTGCAGAGTGATCAATCATGTTATCAGCTTCATCAGAGCCTCAAAGACCCTTTGACGCAACAAAAGAGAGATGAATCACAGAAGACCGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGAAAGAGGATCATGGCTTGAGTTCGATGAAAAATCGTCAAATACTAGCTCAGTTTCCACCACTCGGCTCTCAATTTCCATTCCCACAGCTTCCAACGACTTACCCATTTTCAGATCCAAAAACCCTTAG 999 43.24 MSARSMFPFTSSQWQELEHQALIFKYMVSGIPIPPDLLFGIKRSTLDSTFTSKFFPHHPQHVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDLNHHSNPTFSSLKNNSSLLSYRPFPGHRISSTPNGNGISTKDTNTLLLLEPGSYSDRSPDYRSRYTYGLKEEVDEHVFFSQEPSEATGRADYSASSIANSLQLTPLTMSCSSLYPKQSNSSSLQSDQSCYQLHQSLKDPLTQQKRDESQKTVHRFFDEWPPKERGSWLEFDEKSSNTSSVSTTRLSISIPTASNDLPIFRSKNP 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30119657 30121280 + ClCG03G015180.1 Cla03g01458 269958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01458 332 PANTHER - 5 319 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cla03g01458 332 Pfam WRC 77 118 IPR014977 -
Cla03g01458 332 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Cla03g01458 332 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cla03g01458 332 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cla03g01458 332 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cla03g01458 332 PANTHER GROWTH-REGULATING FACTOR 6 5 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01458 - - - csv:101207344 587.03
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla03g01458 Cla11g00136 CCT
Cla03g01458 Cla11g00136 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01458 Cla-Chr3:30119657 Cla08g01639 Cla-Chr8:29008933 6.98E-40 dispersed
Cla10g01826 Cla-Chr10:34203610 Cla03g01458 Cla-Chr3:30119657 9.05E-39 transposed
Cla11g00136 Cla-Chr11:1698303 Cla03g01458 Cla-Chr3:30119657 1.39E-105 wgd
Cla03g01458 Cla-Chr3:30119657 Cla07g01338 Cla-Chr7:30595404 3.88E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g90 . . . Bda11g01020 Bpe01g00613 . Bma07g00561 Bma11g00608 Cmo10g00789 Cmo11g00738 Cma05g01420 . Car05g01337 . Sed08g0909 Cpe04g01028 Cpe18g00326 Bhi02g01822 Tan09g1089 Cmetu05g1875 . Hepe09g0912 . . Cla11g00136 Cam11g0157 Cec11g0158 Cco11g0170 Clacu11g0293 . Cre11g0644 . . . . Lsi06g00321 Csa02g00019 . Cme02g00291 Blo08g00362 . Bda02g00370 . Bpe08g00542 Bpe13g01232 . . . Cmo05g01417 . Cma10g00759 Cma11g00725 Car10g00681 Car11g00602 . . . . . . . . . Cla03g01458 Cam03g1536 Cec03g1578 Cco03g1571 Clacu03g1560 Cmu03g2116 Cre03g1789 . Csa01g02970 Chy02g01265 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g01826 . 1 414 GRF Transcription Factor Family AT2G36400 51.9 2.7e-72 269.6
Cla11g00136 CCT,ECH 6 112 GRF Transcription Factor Family AT3G13960 73.8 2.6e-43 173.3
Cla03g01458 CCT,ECH 8 110 GRF Transcription Factor Family AT3G13960 70.9 2.5e-41 166.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002565 3 3 1 2 3 1 4 1 1 1 2 1 4 1 2 3 1 1 3 1 2 2 2 2 2 1 2 3 2 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60848 PF08879 WRC 1.10E-20 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g01458 Cla_Chr03 FPKM 28.938852 32.403698 42.217041 39.07608 23.715366 23.556705 23.932648 4.585226 3.377892 3.686054