Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01465 ATGTGTCAATGGAAAGCAGCCACTCTTATTGACTTTCTGTGGGTTTTCTCAAGGTATTTTCGAGGCTCGAAAGCCATTGCAAAGTCAGAATCCGAGAGCTTCTTGTTGCCAGGTTTGAAATCTCCCTCTCGCTTTTCTATGGCGTCCAGCTATAAAATGGCGGATAAGAAAGGAATGGAACAGCTTGTTTTACGGATTTTGGAGGGTGAAGAAGGAGTTGATGCAAGTAAAGATCTCACTAAACCCTCAGTTGGTTCTTTCCCTGATTTTGATCTAAAAGAAACTCGGAGTTTTAGGTGTACAATTCCACAATCCGTAGTTGGGAGTTCTCCTTCACCTGAGATTTCCAGAATGACTCCCCTTAAACCTCCAAAAATTCCAGGCGAAACGGCGATTCGGCGCCCATCATTTGCTCGTTCATCGTTTTCGAAGCCAAAGTCAAGGCTAATAGAGTCACCTTGTCCTGATGGTGCATATTTAGCAGAAGAAAAGGCTCAAGCAAAATCGACAATCTATAGCTCTTCTAAGGTGGACTCCCCAGCTAAGATAACCACAGTGACTAGTCCAAAAGAAGCTTTGAAGTCGGCCCCGATAACTCCGAAAACACCATTGATTGGAACTACTGGAAGTGAGGAGGAAGATGATGAAGAAGTTTACAAAACTGCAGAACTGAAAGTGAAAGAAAGATCAGGGAAGAAATTGAAAAGAACAGTTTTAATTGAATGGGTTGCATTTTTGTGCTTAACAGGTTGTTTAATTGCTAGCTTAACAATAGACAAGTTGCTGACTAAAGAGATTTGGGGATTAGGACTGTGGAAATGGTGTGTTCTGGTATTAGTTATTTTCTGCGGTCGTTTGTTTTCGCAATGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAACTTTCTACTTAAAAGAAAGGTTCTTTATTTTGTCTATGGGCTTCGGAAGAGTGTTATAATTTTTATTTGGCTGGCTTTGGTTCTTCTAGCCTGGGGTTTATTATTTGATCAAAGCAGCAAGAGATCTAAGAAAGGCAATGAGATTCTGAATTATGTTACACGAGCTCTTGGTGCTTCTCTCATTGGAGCAGGACTATGGCTGGTGAAAACTTTGTTGGTGAAGACACTAGCTGCTTCTTTTCAATGCGCTAGATTCTTCGATCGGATTCAAGAATCAATCTTCCATCAATATATCCTGCGCATCCTATCAGGACCTCCACTCATGGAGATGGCGGAGAGGGTTGGGAGAGCGGCAAGCACAGGGCAGTTGAGTTTCAGGCATTTGAAGAAAGAAAGTGATGGTGGGAATGAAGGGAAGGAAGAGGTGATTGATGTAGATAAACTCAAAAAGATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGGCTAATCAATGTTATAAGGAGTTCAGGGCTGTCCACCATCTCTAATACAATAGAGAATTTTAAAGAGGAAGAGGTTGAGCAAAAAGATAAGGAGATTAACAGTGAATGGGAAGCAAGGGCTGCAGCTTACCAGATTTTCAGAAACGTTGCGAAACCGGGTAGCAAGTATATTGATGAAGATGACCTCTTTCGTTTTATGAGTAAGGAGGAAATTGATAATGTGCTGCCATTGTTTGAAGGAGGAGTTGAGACTGGGAAGATAAAGCGAAAAACCCTGAAGAATTGGCTGCTGAGTGTATTCAAGAGTGCAATTCTAAGCAAACCTCTTACAAACCTAGTCCTTCGAAATGTGAATGTTTACGTTGAGCGCAAGTCGTTGGCTCACTCATTGAATGACACCAAGACTGCCATAGAGGAGCTAAACAAGCTTGCCTCTGCAATTATACTGATTGTGATTATCATTGAATGGCTACTTCTGATGGGTTTCTTAACGACGCAAGTACTCGTCTTCATCTCATCACAGCTTCTGCTCGTGGTTTTCATGTTTGGTAACACTGCCAGAACTGTATTCGAAGCCATCATATTCGTATTCGTGATGCATCCATTTGACGTGGGGGATCGTTGTGTCGTAGATGGTGTGCAGATGGTTGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAGATATGACAATGAGAAGATCTTCTATCCAAATTCTGTTCTAGCCACCAAACCCATCAGTAACTACTACCGGAGCCCCGAAATGGGTGATTCGATCGAATTTTCTGTTGACTTTTCCACTTCAATTGAGAGCATTGGAGCTCTAAAAGCAAGAATAAAAACATACATAGAAAGCAAACCTCAGTTCTGGCGTCCGAACCACAGTGTCGTAGTGAAGGAGATCGAGAATGTCAACAAGATGAAACTAGCTCTATGTGTCAATCACACCATAAACTTTCAGAACTACGGCGACAAGAGCAGTCGAAGATCGGATTTAGTCTTCGAGCTGAAGAGAATTCTCGAAGATCTCGGTATCAAATATCATCTGCTACCTCAAGAAGTTCATCTCAACTATGTAGGTTCAGCAGCTCCAGTGGTTCCACCCTCTCAAAGATGA 2514 41.65 MCQWKAATLIDFLWVFSRYFRGSKAIAKSESESFLLPGLKSPSRFSMASSYKMADKKGMEQLVLRILEGEEGVDASKDLTKPSVGSFPDFDLKETRSFRCTIPQSVVGSSPSPEISRMTPLKPPKIPGETAIRRPSFARSSFSKPKSRLIESPCPDGAYLAEEKAQAKSTIYSSSKVDSPAKITTVTSPKEALKSAPITPKTPLIGTTGSEEEDDEEVYKTAELKVKERSGKKLKRTVLIEWVAFLCLTGCLIASLTIDKLLTKEIWGLGLWKWCVLVLVIFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIIFIWLALVLLAWGLLFDQSSKRSKKGNEILNYVTRALGASLIGAGLWLVKTLLVKTLAASFQCARFFDRIQESIFHQYILRILSGPPLMEMAERVGRAASTGQLSFRHLKKESDGGNEGKEEVIDVDKLKKMKQEKISAWTMRGLINVIRSSGLSTISNTIENFKEEEVEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEDDLFRFMSKEEIDNVLPLFEGGVETGKIKRKTLKNWLLSVFKSAILSKPLTNLVLRNVNVYVERKSLAHSLNDTKTAIEELNKLASAIILIVIIIEWLLLMGFLTTQVLVFISSQLLLVVFMFGNTARTVFEAIIFVFVMHPFDVGDRCVVDGVQMVVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNYYRSPEMGDSIEFSVDFSTSIESIGALKARIKTYIESKPQFWRPNHSVVVKEIENVNKMKLALCVNHTINFQNYGDKSSRRSDLVFELKRILEDLGIKYHLLPQEVHLNYVGSAAPVVPPSQR 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30176717 30180997 - ClCG03G015250.2 Cla03g01465 269965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01465 837 Pfam Mechanosensitive ion channel 607 812 IPR006685 GO:0016020|GO:0055085
Cla03g01465 837 Gene3D - 666 715 IPR023408 -
Cla03g01465 837 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 56 566 - -
Cla03g01465 837 MobiDBLite consensus disorder prediction 105 130 - -
Cla03g01465 837 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 582 828 IPR016688 -
Cla03g01465 837 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 56 566 IPR016688 -
Cla03g01465 837 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 582 828 - -
Cla03g01465 837 PIRSF Memb_At2g17000 573 836 IPR016688 -
Cla03g01465 837 PIRSF Memb_At2g17000 42 568 IPR016688 -
Cla03g01465 837 SUPERFAMILY Sm-like ribonucleoproteins 656 715 IPR010920 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00401 Cla-Chr2:3909002 Cla03g01465 Cla-Chr3:30176717 9.79E-177 dispersed
Cla03g01465 Cla-Chr3:30176717 Cla05g01622 Cla-Chr5:27554440 0 dispersed
Cla03g01465 Cla-Chr3:30176717 Cla02g01085 Cla-Chr2:22994722 7.16E-178 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01465 K22048 - csv:101209209 1350.11