Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01469 ATGGAGGCCGACGATGAATCGAAATCCGTAAACGAAGCCAAGAACAAGAATTCCACACTACAAACGACATGTCGTTTCCCTGATCTTCCTCGTCTGACCATCGAAGAGGCTTTCAATGATTATTTGGGACGTCGATCCGCCATTATCAAAGCTCTCACCACTGATGTCGATGAACTTCTTCGCCAATGTGATCCAGAGAAGCCTGAGGTTTGTCTGTACGGGCTACCGGATGGAGAATGGAAAGTGGAGCCACCGGTGGAACTCCTTCCCTCCGACGAGCCGGAGCCTACCGCCGGCATCAACTGGGGCAGAACTCACACGGAACTTGACGAATGGTTGTTGTACGTCGCTCTTCATAGCGAGGCTTGGTTGATCTCTTTTGCCCTCCATTCTTTTCAAAATCACTCCGATAGGGAGAATCTATTTAAGATGATAAACGAACTGCCGACGGTAACCGATGTGGTGGACCAATTTGTAACGACGAATGAAGAGTTGAAATTCAGGGAGGGCTTCAAAAATAAGCACTTTACGACGGTGACGGAAGCCGAAGCGACACGGCTGGTGGCTGCGGCAACGGTGGAGGAGGTATTCAAGGATTTTGCCGGCCGTCGAGCCGCCATCGTCAAAGCTCTCACCACAGATGTCGAAGAATTTGTTCGGCAAATTAGTGAGAAGGAAAAAGAGGTGTGCCTGTACGGACATGCTGACGGAGAATGGGAATTACGAGAAGCAATGAACGGAGAAATGACGTGTAGGAATCGGGATCCGACGGTGGGGATTAACTTCGGGAGAGAAGGGATTCCATTGATCCAATGGTTGAGGCTTGTCGCCATTCACTCCGACGCTTGGTTGATCTCCACGGCCTTCCATAACCCTTCCCACACTCATTTCCGCAAACTCGATAGGGGTCACTTCTCATCAAGCAAAACATATCCACAAATTTAA 945 49.63 MEADDESKSVNEAKNKNSTLQTTCRFPDLPRLTIEEAFNDYLGRRSAIIKALTTDVDELLRQCDPEKPEVCLYGLPDGEWKVEPPVELLPSDEPEPTAGINWGRTHTELDEWLLYVALHSEAWLISFALHSFQNHSDRENLFKMINELPTVTDVVDQFVTTNEELKFREGFKNKHFTTVTEAEATRLVAAATVEEVFKDFAGRRAAIVKALTTDVEEFVRQISEKEKEVCLYGHADGEWELREAMNGEMTCRNRDPTVGINFGREGIPLIQWLRLVAIHSDAWLISTAFHNPSHTHFRKLDRGHFSSSKTYPQI 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30202335 30207643 + ClCG03G015290.2 Cla03g01469 269969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01469 314 PANTHER CPG BINDING PROTEIN 190 303 IPR045104 GO:0006355|GO:0042393
Cla03g01469 314 PANTHER CPG BINDING PROTEIN 32 162 IPR045104 GO:0006355|GO:0042393
Cla03g01469 314 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 8 32 162 - -
Cla03g01469 314 Coils Coil 208 228 - -
Cla03g01469 314 Pfam Alfin 192 302 IPR021998 GO:0006355|GO:0042393
Cla03g01469 314 Pfam Alfin 33 156 IPR021998 GO:0006355|GO:0042393
Cla03g01469 314 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 8 190 303 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla03g01469 Cla11g00146 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01469 Cla-Chr3:30202335 Cla07g00398 Cla-Chr7:4960689 5.23E-23 dispersed
Cla11g00146 Cla-Chr11:1751974 Cla03g01469 Cla-Chr3:30202335 1.39E-16 wgd
Cla03g01469 Cla-Chr3:30202335 Cla09g00078 Cla-Chr9:768976 1.17E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01469 - - fve:101313237 208.379