Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01472 ATGGCTCCAAACCATTGGTTCGCCAAGAAGAGTGGACCAGTTAACATCATTGTAGGTTCTCATGTCTGGATTGAAGATCCAAAACTAGCTTGGATCGACGGTGAAGTTTTCCGCATCAATGGCGAGGAAGTTCACGTCAGGGCTACCAATGGGAAAACAGTTGTTACCAATATATCAAAAATATTCCCCAAGGATACTGAAGCACCTGCTGCAGGTGTAGATGACATGACAAAGCTGTCATACTTGCATGAACCTGGGGTTCTGAGCAACTTGGCAACCAGATATGAACTCAATGAAATTTATACATACACTGGAAATATACTTATTGCAATAAATCCATTCCAAAGATTACCTCATCTTTATGATACTCACATGATGGAACAATACAAAGGAGCTGGATTTGGAGAACTAAGTCCTCATGTCTTTGCAGTTGCTGAAGTGGCATATAGGGCAATGATTAATGAAGGAAAAAGCAATTCAATTCTAGTTAGTGGAGAAAGTGGTGCTGGTAAGACTGAGACCACAAAGATGCTCATGCGGTATCTTGCATACCTTGGAGGTCGATCTGGAGTGGAAGGGCGAACTGTTGAACAACAAGTCCTAGAATCCAATCCTGTTCTTGAAGCATTTGGAAATGCAAAAACTGTCAGGAACAACAATTCAAGTCGCTTTGGTAAATTTGTTGAGATCCAATTTGATAAGAGTGGGAGAATATCTGGGGCAGCTGTTCGAACTTATTTGCTTGAAAGGTCTCGAGTATGTCAGATCTCGAATCCTGAAAGAAATTATCATTGCTTTTACCTTCTCTGCGCAGCTCCTCCTGAGGAAAGGGAGAAGTATAAATTAGCAGACCCTAAATCGTTCCACTACTTAAATCAATCTAGCTGCTTTGAGTTGGATGGAGTGAACGATGCCCATGAATATCTTGCAACCAGAAGGGCTATGGATGTAGTTGGAATCAGCGAGGAGGAGCAGGAGGCAATTTTTAGGGTTGTAGCTGCAATTTTGCATCTTGGAAATATTGAATTTGCCAAGGGAGAGGAGATTGATTCTTCAGTCATTAAGGATGAAAAATCCAGATTCCATCTTAATACCACAGCCGAACTGCTTAAGTGTGATGCAAAGAGTTTGGAGGATGCACTGATTCAACGTGTTATGGTAACACCAGAAGAGGTTATCACTCGAACTCTTGATCCTGTGGCTGCTTTGGGTAGCAGGGATGCCTTGGCTAAAACGATCTATTCGCGACTCTTTGACTGGCTTGTGGAGAAGATTAACAATTCAATTGGGCAAGACCCGAATTCTAAATCATTGATTGGAGTTCTGGATATTTATGGATTTGAGAGTTTTAAGTTCAACAGTTTTGAACAGTTCTGCATCAATTTTACAAATGAAAAACTGCAGCAACATTTCAATCAGCATGTTTTCAAAATGGAGCAGGAGGAATATACCAAAGAACAAATCAATTGGAGTTATATTGAGTTTGTTGATAACCAGGATGTCTTGGATCTGATTGAAAAGGTGTTGAACTTTTCTTCCCCCATCCACCCCATTATTATTTGTCATTCTGAAGATATTTCTGATCATGCGTGTCAGATCCTAAAACCAGGAGGAATTATCGCACTTCTGGATGAGGCCTGCATGTTTCCTAAATCTACACACGAAACATTTGCTCAGAAGTTATACCAGACTTTCAAGAACAACAAACGCTTCATTAAGCCTAAGCTATCTCGTACTAGTTTTACAATATCTCATTATGCTGGAGAGGTGACTTATTTGGCAGATCTATTCTTGGATAAAAACAAAGATTACGTGGTAGCAGAACATCAGGCCCTCTTGACAGCTTCAAAATGCCCCTTTGCGAGGGCTTTATTTCCTCCTCAACCAGAGGAAACAGCAAAATCCTCAAAATTTTCTTCCATTGGTTCACGTTTTAAATTACAACTTCAATCTTTAATGGAGACCTTAAATTCAACAGAGCCTCACTACATCAGATGTGTAAAGCCAAATAATGCGCTCAAGCCTGCTATTTTTGAGAACTCAAATGTTATCCAACAATTGCGTTGTGGTGGTGTCCTTGAAGCAATTAGGATCAGCTGTGCTGGATATCCTACCAGAAGAACATTTTATGAGTTCCTCCTACGTTTTGGGGTTCTTGCACCAGAAGTTTTGGATGGAAACTATGATGACAAGGTAGCATGCCAGATGATCCTGGATAAAATGGGTTTGAAAGGATACCAGATTGGTAAGACAAAAATCTTCCTGAGGGCTGGGCAGATGGCTTCTCTGGACGCAAAGAGAACAGAGGTGCTTAGCAATGCTGCCAGAACTATTCAAATGCAAATTAGAACATTTATTGCACGCAAGGAGTTTGTTGCATTACGTAAAGCTGCTATACATGTGCAATCATTTACTCGAGGTACTTTCTTGGACTGTCTAAGAAATACCACATGCTCAATTGAGTTTCTTTTTGGTCTTTTTCGAATTTCAAAAATGTTCTTTAGCAATAGCATAGCAAGAAATGGAAATTTTTTGCACGACTGTAGGGGAAATGTTGAAGATGTTTGTGAGAAGGGTTGTGACTTGCTAGAAGGAGATGGTCCAAAATCTCCAACCCTGTCAAGGGCAGGGTATCTAGCCCATTTTTTCTTTTTCCTTCTTCTTTCTGGGATAGCAAACAGTGTTTTGGCTCGAAAACTATTTGAGCAGTTGCGACGCGAAGCAGCAGCTTTAAAGATCCAGAAGTGTTTCAAGCGATATATTGCCAGGAAATCATACTTAGGTTTGCTCTCATCTGCAATCACATTGCAAACAGGGTTAAGGGCAATGAAGGCTCGCGATGAATTCAGATTCAGAAAGCGTACTAAGGCAGCAATTATCATTCAGGCACGTTTGCGTTGTCACCTGGCGTATTCTTACTATAAGAGACTCCAAAAGGCTGCACTATACACGCAGTGTGGTTGGAGGCGACGAGTTGCACGAAAGGAGCTAAGAAGTCTGAAAATGGCTGCAAGGGAAACTGGAGCACTCAAAGAAGCAAAAGACAAATTAGAAAAACGTGTAGAAGAACTTACATGGCGCTTGCAACTTGAGAAGCGGCTGAGGACTGATCTGGAAGAGGAGAAAGCCCAAGAAATTGCCAAATTACAAGATGCTTTACACAGCATGCAATTACAAGTTGAAGAAGCAAATGCTCAAGTTATCAAAGAGCGAGAGGCTGCTCAGAAAGCTATTGAAGAAGCACCTCCAGTTGTCAAGGAAACTCCAGTTTTCGTGGAGGATACCGAAAAAATCAATTCCTTAATGGCTGAGGTGGAGAGTTTAAAGGCTTCACTGCTGTCAGAAAAAACGTCAGCTGAAGAAGCTAGAAGAGCTTGTACAGATGCTGAAGCCAAAAATGTGGAGCTGACTAAAAGACTTCAAGATGCAGAGCAGAAGGTGGATCAGCTTCAGGAGTCAGTGCAGAGGCTTGAAGAAAAGCTTTCAAATTCAGAATCAGAGAACCAGGTACTTCGTCAACAAGCATTGACTATGTCGCCGACAGGAAAAGCTTTGTCTGCTAGACCAAAGTCAATGATTATTCAGAGGACACCAGAGAATGGAAATATTCCACATGGAGAGGCCAAAGTATCATCTGATACGACTCTTGCATTATCAAATGTACGTGAGCCTGAATCAGAGGAAAAACCACAGAAATCACTTAATGAGAAACAGCAGGAGAACCAGGATCTGCTAGTGAAGTGCATATCTCAAGATTTAGGATTTTCCGGAGGCAAACCAATTGCTGCTTGTGTCATATATAAATGTCTTCTTCACTGGAGGTCGTTTGAAGTTGAAAGAACCAGCATATTTGATCGAATCATTCAAACAATAGCTTCATCCATAGAGGTCCCGGATAACAATGATGTATTAACTTATTGGTTATCTAATACATCCACATTATTGTTGCTTCTTCAACACACTCTCAAAGCTAGTGGAGCTGCTAGCTTGACTCCTCAAAGGAGGAGAACTACTTCAGCTTCTCTTTTTGGAAGGATGTCTCAAGGATTAAGGGCTTCTCCACAAAGTGCTGGACTATCATTTCTTAATGGTCGGGGGCTTGGTAGATTGGACGATTTTCGACAGGTTGAGGCAAAGTATCCAGCACTATTGTTTAAGCAGCAGCTTACAGCATTTTTGGAGAAAATATATGGAATGATAAGAGACAACCTAAAGAAAGAGATTTCGCCTTTACTTGGACTATGTATTCAGGCCCCTAGGACATCACGGGCGAGCTTAGTGAAAGGACGCTCCCAAGCAAACGCTATGGCTCAGCAAGCCTTAATTGCACATTGGCAAAGCATTGTGAAAAGCTTAGACAATTATTTGAAGATCATGAAAGCAAACTATGTACCTCCATTCTTGGTCCGCAAAGTTTTCACTCAGATATTCTCATTTATTAATGTCCAACTATTTAACAGCCTTCTTTTGCGGCGGGAGTGTTGTTCATTCAGCAATGGAGAGTATGTGAAAGCTGGCTTGTCTGAATTAGAACAGTGGTGTTCTGGAGCAACTGAGGAATATGCAGGTTCTGCCTGGGATGAATTAAAGCACATTAGGCAGGCTGTTGGATTCCTTGTTATACATCAAAAACCCAAAAAGACGTTGAATGAGATAACAAAAGACCTATGTCCTGTGCTTAGCATACAACAGTTGTATAGGATCAGTACAATGTACTGGGATGACAAATATGGCACACATAGCGTATCTTCAGAAGTTATTTCGAGCATGCGAATTCTGATGACTGAAGACTCCAACAATGCCATCAGCTCATTCCTGTTAGATGATGACTCTAGGCCTCTTTTTTGGGTTAGATTGTGGAAGCAATTTGTATTTAGTGTGATGTAA 4887 41.11 MAPNHWFAKKSGPVNIIVGSHVWIEDPKLAWIDGEVFRINGEEVHVRATNGKTVVTNISKIFPKDTEAPAAGVDDMTKLSYLHEPGVLSNLATRYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAGFGELSPHVFAVAEVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAVRTYLLERSRVCQISNPERNYHCFYLLCAAPPEEREKYKLADPKSFHYLNQSSCFELDGVNDAHEYLATRRAMDVVGISEEEQEAIFRVVAAILHLGNIEFAKGEEIDSSVIKDEKSRFHLNTTAELLKCDAKSLEDALIQRVMVTPEEVITRTLDPVAALGSRDALAKTIYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKFNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQINWSYIEFVDNQDVLDLIEKVLNFSSPIHPIIICHSEDISDHACQILKPGGIIALLDEACMFPKSTHETFAQKLYQTFKNNKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQALLTASKCPFARALFPPQPEETAKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALKPAIFENSNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFLLRFGVLAPEVLDGNYDDKVACQMILDKMGLKGYQIGKTKIFLRAGQMASLDAKRTEVLSNAARTIQMQIRTFIARKEFVALRKAAIHVQSFTRGTFLDCLRNTTCSIEFLFGLFRISKMFFSNSIARNGNFLHDCRGNVEDVCEKGCDLLEGDGPKSPTLSRAGYLAHFFFFLLLSGIANSVLARKLFEQLRREAAALKIQKCFKRYIARKSYLGLLSSAITLQTGLRAMKARDEFRFRKRTKAAIIIQARLRCHLAYSYYKRLQKAALYTQCGWRRRVARKELRSLKMAARETGALKEAKDKLEKRVEELTWRLQLEKRLRTDLEEEKAQEIAKLQDALHSMQLQVEEANAQVIKEREAAQKAIEEAPPVVKETPVFVEDTEKINSLMAEVESLKASLLSEKTSAEEARRACTDAEAKNVELTKRLQDAEQKVDQLQESVQRLEEKLSNSESENQVLRQQALTMSPTGKALSARPKSMIIQRTPENGNIPHGEAKVSSDTTLALSNVREPESEEKPQKSLNEKQQENQDLLVKCISQDLGFSGGKPIAACVIYKCLLHWRSFEVERTSIFDRIIQTIASSIEVPDNNDVLTYWLSNTSTLLLLLQHTLKASGAASLTPQRRRTTSASLFGRMSQGLRASPQSAGLSFLNGRGLGRLDDFRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGRSQANAMAQQALIAHWQSIVKSLDNYLKIMKANYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLSELEQWCSGATEEYAGSAWDELKHIRQAVGFLVIHQKPKKTLNEITKDLCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRILMTEDSNNAISSFLLDDDSRPLFWVRLWKQFVFSVM 1628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30225431 30238193 - ClCG03G015310.2 Cla03g01472 269972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01472 1628 Pfam Myosin head (motor domain) 535 756 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla03g01472 1628 Pfam Myosin head (motor domain) 73 507 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla03g01472 1628 Gene3D - 956 1005 - -
Cla03g01472 1628 Gene3D - 904 955 - -
Cla03g01472 1628 Gene3D - 769 815 - -
Cla03g01472 1628 Gene3D - 261 319 - -
Cla03g01472 1628 ProSiteProfiles Myosin motor domain profile. 71 768 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla03g01472 1628 ProSiteProfiles IQ motif profile. 906 935 IPR000048 GO:0005515
Cla03g01472 1628 SMART MYSc_2a 65 769 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla03g01472 1628 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 17 66 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cla03g01472 1628 ProSiteProfiles IQ motif profile. 771 797 IPR000048 GO:0005515
Cla03g01472 1628 Coils Coil 1000 1080 - -
Cla03g01472 1628 Gene3D - 703 766 - -
Cla03g01472 1628 PANTHER MYOSIN-5 15 507 - -
Cla03g01472 1628 Gene3D Myosin VI head, motor domain, U50 subdomain 321 637 - -
Cla03g01472 1628 ProSiteProfiles Dilute domain profile. 1285 1596 IPR002710 -
Cla03g01472 1628 CDD MyosinXI_CBD 1236 1611 IPR037975 GO:0007015
Cla03g01472 1628 CDD MYSc_Myo11 85 756 IPR036018 -
Cla03g01472 1628 Pfam DIL domain 1472 1575 IPR002710 -
Cla03g01472 1628 PRINTS Myosin heavy chain signature 491 519 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla03g01472 1628 PRINTS Myosin heavy chain signature 158 183 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla03g01472 1628 PRINTS Myosin heavy chain signature 205 232 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla03g01472 1628 PRINTS Myosin heavy chain signature 438 466 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla03g01472 1628 PRINTS Myosin heavy chain signature 101 120 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla03g01472 1628 Gene3D Kinesin motor domain 74 698 IPR036961 -
Cla03g01472 1628 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 853 1006 IPR027417 -
Cla03g01472 1628 SMART DIL_2 1471 1578 IPR002710 -
Cla03g01472 1628 SMART iq_5 905 927 IPR000048 GO:0005515
Cla03g01472 1628 SMART iq_5 953 975 IPR000048 GO:0005515
Cla03g01472 1628 SMART iq_5 770 792 IPR000048 GO:0005515
Cla03g01472 1628 SMART iq_5 976 998 IPR000048 GO:0005515
Cla03g01472 1628 SMART iq_5 928 950 IPR000048 GO:0005515
Cla03g01472 1628 ProSiteProfiles IQ motif profile. 929 958 IPR000048 GO:0005515
Cla03g01472 1628 Coils Coil 1119 1174 - -
Cla03g01472 1628 PANTHER MYOSIN-5 535 810 - -
Cla03g01472 1628 Pfam Myosin N-terminal SH3-like domain 18 59 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cla03g01472 1628 Gene3D - 448 659 - -
Cla03g01472 1628 PANTHER MYOSIN 15 507 - -
Cla03g01472 1628 Pfam IQ calmodulin-binding motif 955 975 IPR000048 GO:0005515
Cla03g01472 1628 Pfam IQ calmodulin-binding motif 773 791 IPR000048 GO:0005515
Cla03g01472 1628 Pfam IQ calmodulin-binding motif 908 926 IPR000048 GO:0005515
Cla03g01472 1628 ProSiteProfiles IQ motif profile. 954 980 IPR000048 GO:0005515
Cla03g01472 1628 PANTHER MYOSIN-5 894 1615 - -
Cla03g01472 1628 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 808 IPR027417 -
Cla03g01472 1628 ProSiteProfiles IQ motif profile. 977 1006 IPR000048 GO:0005515
Cla03g01472 1628 PANTHER MYOSIN 535 810 - -
Cla03g01472 1628 PANTHER MYOSIN 894 1615 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01661 Cla-Chr2:31426214 Cla03g01472 Cla-Chr3:30225431 0 dispersed
Cla03g01472 Cla-Chr3:30225431 Cla09g00324 Cla-Chr9:3151804 0 dispersed
Cla03g01472 Cla-Chr3:30225431 Cla06g00123 Cla-Chr6:1339129 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01472 K10357 - csv:101204300 2622.42