Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01476 ATGAGGAAGGGAGGCTTCAGCAACAACCTCAATCTCAAGCTCAGTCTTCCTCAAGAAGAACAATCCATAGCGACGTTTTTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTCGTAAACAGAGATGGGGTTCGTATTGTTTCTCAAAGCGAAGTTGAAGCGCCACCTCCGATTAAGCCTACAGATGATCAGTTGAGTTTAGCGGACATAGACATTATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAAGAGTCTCACCGCAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCACAGTGCCCTTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGATCTATATATATCATCCTAGAGTACATGGATGGAGGATCTTTAGCAGATTTTTTGAAAAAGGTTAAAAAGATTCAAGAACCATATCTTGCTGCCCTTTGTAAGCAGGTGCTGAAGGGGTTGTCGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCTTCAAATTTATTAATAAACCATAGAGGGGAAGTCAAGATTACAGACTTTGGTGTCAGTGCGATTATGGCAAGCACATCTGGGGAGGCTAATACTTTTGTTGGCACATATAACTATATGTCTCCAGAGAGAATTGTGGGAGAGAGGTATGACAATAAAAGTGACATTTGGAGCTTGGGCCTGATATTACTCGAGTGTGCAACTGGAAAATTTCCTTATTCTCCACCAGAACAAGATGGAGGATGGGTGAACTTTTATGAGCTTATGGAAGCCATTGTTGAAGGCGAACCTCCTTCTGCTCCGGCTGACCAATTTACTCCCAACTTCTGTTCGTTCATTTCTGCATGCTTATTTCAAGTGTTTTACATTATGAGATTGCTAACTCAGAAACTGGTGATCTTTATGAATATCAGTGTGCAAACGGACCCAAAGGATAGACTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATACGGATATTGACCTGTCATCTTACTTCAACGATGCAGGATCTCCACTTGCAACTTTCTAA 1134 40.83 MRKGGFSNNLNLKLSLPQEEQSIATFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKKIQEPYLAALCKQVLKGLSYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGERYDNKSDIWSLGLILLECATGKFPYSPPEQDGGWVNFYELMEAIVEGEPPSAPADQFTPNFCSFISACLFQVFYIMRLLTQKLVIFMNISVQTDPKDRLSARELLEHPFIKMYEDTDIDLSSYFNDAGSPLATF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30269699 30273945 + ClCG03G015350.1 Cla03g01476 269976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01476 377 Pfam Protein kinase domain 73 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01476 377 ProSiteProfiles Protein kinase domain profile. 71 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01476 377 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 9 313 - -
Cla03g01476 377 SMART serkin_6 71 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01476 377 CDD PKc_MAPKK_plant_like 69 357 - -
Cla03g01476 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Cla03g01476 377 Gene3D Transferase(Phosphotransferase) domain 1 151 373 - -
Cla03g01476 377 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Cla03g01476 377 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 326 376 - -
Cla03g01476 377 SUPERFAMILY Protein kinase-like (PK-like) 65 359 IPR011009 -
Cla03g01476 377 PANTHER MAP KINASE KINASE 9 313 - -
Cla03g01476 377 Gene3D Phosphorylase Kinase; domain 1 47 150 - -
Cla03g01476 377 PANTHER MAP KINASE KINASE 326 376 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla03g01476 Cla11g00151 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01476 Cla-Chr3:30269699 Cla11g01134 Cla-Chr11:23296140 1.50E-38 dispersed
Cla04g01028 Cla-Chr4:25428858 Cla03g01476 Cla-Chr3:30269699 2.91E-52 transposed
Cla07g01350 Cla-Chr7:30670398 Cla03g01476 Cla-Chr3:30269699 8.04E-60 transposed
Cla10g01325 Cla-Chr10:28198744 Cla03g01476 Cla-Chr3:30269699 7.26E-73 transposed
Cla11g00183 Cla-Chr11:2179226 Cla03g01476 Cla-Chr3:30269699 1.56E-145 transposed
Cla11g00151 Cla-Chr11:1802433 Cla03g01476 Cla-Chr3:30269699 1.41E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80452 PF00069 Pkinase 4.30E-68 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01476 K20603 - csv:101204545 681.019