Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01476 ATGAGGAAGGGAGGCTTCAGCAACAACCTCAATCTCAAGCTCAGTCTTCCTCAAGAAGAACAATCCATAGCGACGTTTTTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTCGTAAACAGAGATGGGGTTCGTATTGTTTCTCAAAGCGAAGTTGAAGCGCCACCTCCGATTAAGCCTACAGATGATCAGTTGAGTTTAGCGGACATAGACATTATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAAGAGTCTCACCGCAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCACAGTGCCCTTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGATCTATATATATCATCCTAGAGTACATGGATGGAGGATCTTTAGCAGATTTTTTGAAAAAGGTTAAAAAGATTCAAGAACCATATCTTGCTGCCCTTTGTAAGCAGGTGCTGAAGGGGTTGTCGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCTTCAAATTTATTAATAAACCATAGAGGGGAAGTCAAGATTACAGACTTTGGTGTCAGTGCGATTATGGCAAGCACATCTGGGGAGGCTAATACTTTTGTTGGCACATATAACTATATGTCTCCAGAGAGAATTGTGGGAGAGAGGTATGACAATAAAAGTGACATTTGGAGCTTGGGCCTGATATTACTCGAGTGTGCAACTGGAAAATTTCCTTATTCTCCACCAGAACAAGATGGAGGATGGGTGAACTTTTATGAGCTTATGGAAGCCATTGTTGAAGGCGAACCTCCTTCTGCTCCGGCTGACCAATTTACTCCCAACTTCTGTTCGTTCATTTCTGCATGCTTATTTCAAGTGTTTTACATTATGAGATTGCTAACTCAGAAACTGGTGATCTTTATGAATATCAGTGTGCAAACGGACCCAAAGGATAGACTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATACGGATATTGACCTGTCATCTTACTTCAACGATGCAGGATCTCCACTTGCAACTTTCTAA 1134 40.83 MRKGGFSNNLNLKLSLPQEEQSIATFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKKIQEPYLAALCKQVLKGLSYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGERYDNKSDIWSLGLILLECATGKFPYSPPEQDGGWVNFYELMEAIVEGEPPSAPADQFTPNFCSFISACLFQVFYIMRLLTQKLVIFMNISVQTDPKDRLSARELLEHPFIKMYEDTDIDLSSYFNDAGSPLATF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30269699 30273945 + ClCG03G015350.1 Cla03g01476 269976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01476 377 Pfam Protein kinase domain 73 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01476 377 ProSiteProfiles Protein kinase domain profile. 71 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01476 377 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 9 313 - -
Cla03g01476 377 SMART serkin_6 71 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01476 377 CDD PKc_MAPKK_plant_like 69 357 - -
Cla03g01476 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Cla03g01476 377 Gene3D Transferase(Phosphotransferase) domain 1 151 373 - -
Cla03g01476 377 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Cla03g01476 377 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 326 376 - -
Cla03g01476 377 SUPERFAMILY Protein kinase-like (PK-like) 65 359 IPR011009 -
Cla03g01476 377 PANTHER MAP KINASE KINASE 9 313 - -
Cla03g01476 377 Gene3D Phosphorylase Kinase; domain 1 47 150 - -
Cla03g01476 377 PANTHER MAP KINASE KINASE 326 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01476 K20603 MKK2; mitogen-activated protein kinase kinase 2 [EC:2.7.12.2] - csv:101204545 681.019
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla03g01476 Cla11g00151 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01476 Cla-Chr3:30269699 Cla11g01134 Cla-Chr11:23296140 1.50E-38 dispersed
Cla04g01028 Cla-Chr4:25428858 Cla03g01476 Cla-Chr3:30269699 2.91E-52 transposed
Cla07g01350 Cla-Chr7:30670398 Cla03g01476 Cla-Chr3:30269699 8.04E-60 transposed
Cla10g01325 Cla-Chr10:28198744 Cla03g01476 Cla-Chr3:30269699 7.26E-73 transposed
Cla11g00183 Cla-Chr11:2179226 Cla03g01476 Cla-Chr3:30269699 1.56E-145 transposed
Cla11g00151 Cla-Chr11:1802433 Cla03g01476 Cla-Chr3:30269699 1.41E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g140 . Blo16g00976 . Bda11g01036 Bpe01g00601 . . Bma11g00589 Cmo10g00767 Cmo11g00726 . . . . Sed08g0891 Cpe04g01040 Cpe18g00340 Bhi02g01848 Tan09g1114 Cmetu09g0930 . . . . Cla11g00151 Cam11g0173 Cec11g0175 Cco11g0187 Clacu11g0310 Cmu11g0162 Cre11g0661 . . . Cone7ag0750 Lsi06g00302 Csa02g00036 Chy05g01452 Cme02g00272 . Blo14g00559 Bda02g00383 . . Bpe13g01246 . . Sed05g1512 . . Cma10g00741 Cma11g00712 Car10g00666 Car11g00592 . . Bhi06g01629 Tan08g0048 Cmetu04g1006 . Hepe08g2677 . . Cla03g01476 Cam03g1552 Cec03g1594 Cco03g1588 Clacu03g1576 Cmu03g2132 Cre03g1805 Lsi11g00177 Csa01g02954 Chy02g01249 Cme05g02055
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla03g01476 CCT 28 375 MAP Kinase Kinase Gene Family AT4G26070 66.4 2.0e-132 469.2
Cla11g00151 CCT 27 307 MAP Kinase Kinase Gene Family AT4G26070 67.0 3.1e-109 392.1
Cla03g01476 CCT 1 348 MAP Kinase Kinase Gene Family AT4G29810 65.6 7.1e-130 460.7
Cla11g00151 CCT 1 308 MAP Kinase Kinase Gene Family AT4G29810 62.4 9.0e-109 390.6
Cla11g00183 . 10 346 MAP Kinase Kinase Gene Family AT4G29810 53.0 2.0e-100 362.8
Cla10g01325 . 86 568 MAP Kinase Kinase Gene Family AT5G40440 79.1 2.9e-228 788.1
Cla07g01350 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 68.6 1.3e-134 476.5
Cla04g01028 . 1 224 MAP Kinase Kinase Gene Family AT1G51660 55.4 9.8e-69 257.7
Cla07g01350 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 63.9 1.4e-128 456.4
Cla04g01028 . 1 217 MAP Kinase Kinase Gene Family AT3G21220 55.3 2.7e-68 256.1
Cla11g00183 . 1 376 MAP Kinase Kinase Gene Family AT5G56580 74.5 2.9e-158 555.1
Cla03g01476 CCT 7 374 MAP Kinase Kinase Gene Family AT5G56580 56.4 6.1e-116 414.5
Cla11g00151 CCT 1 308 MAP Kinase Kinase Gene Family AT5G56580 55.2 1.7e-94 343.2
Cla04g01028 . 1 219 MAP Kinase Kinase Gene Family AT1G18350 70.5 1.1e-86 317.0
Cla04g01028 . 1 203 MAP Kinase Kinase Gene Family AT3G06230 58.0 1.8e-65 246.5
Cla04g01028 . 1 215 MAP Kinase Kinase Gene Family AT1G73500 72.2 2.3e-90 329.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80452 PF00069 Pkinase 4.30E-68 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g01476 Cla_Chr03 FPKM 1.791667 0.0 0.0 0.0 1.771073 0.0 0.0 0.0 0.0 0.465571