Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla03g01479 | ATGGAGAATCATCAAGAGGTTGAAGCCGAGGAAGAAGATGAAGTGGGACCCTCCGCCGTGGAGGAGGAAGAAATTGGATTTGTGGGTTCGAGCTTGACTTTGGAGAAGGTCGCTGCAGCCAAACAGTACATTGAGAATCATTACAAGGCTCAAAAAAAGCACATTGAAGAACGCAAAGAGAGGCGCTCAGTGCTTGAAAGGAAGTTGGCATCTTCAGATGTCTCAGAAGAAGAACAAATTAATCTATTGAAGGATTTGGAGCGCACGGAGACTCAATACATGCGGCTGAAAAGGCATAAAATTTGTGTCGAGGATTTCAACCTTTTGACAATTATTGGGCGAGGTGCTTTTGGGGAGGTCAGACTTTGTCGGGAGAAGAAAACAGGCAACATATATGCCATGAAGAAGCTGAAGAAATCAGAAATGCTCAGCAGAGGACAGGTTGAACATGTCAGAGCTGAAAGGAATTTACTTGCAGAAGTTGCGAGTCACTGCATTGTGAAACTCTATTATTCCTTCCAAGATGCTGAATACTTGTATCTGATCATGGAGTATCTTCCAGGAGGTGACATGATGACTTTACTGATAAGGGAGGAAACTTTGACGGAAACTGTAGCTAGATTTTACATTGCGCAAAGTGTTTTGGCTATAGAGTCAATTCATAAACATAACTACATCCACAGAGACATAAAACCTGATAACCTTCTACTGGACAAAAGGGGTCATATGAAACTCTCTGATTTTGGTCTTTGCAAGCCTCTTGACTGCACAAATCTGTCTGATATAAATGAAAATGAAGTCCTTGATGATGAAAACTTGCACGATACGGTGGATGTGGATGAGAGCTTTCCAGGTAAAAAAAGTGGGAGACGCTGGAAGAGCCCCCTCGAACAACTTCAGCATTGGCAGATTAACAGAAGGAAACTGGCATTTTCCACGGTTGGCACTCCAGATTATATAGCTCCAGAAGTGTTGCTAAAAAAAGGATACGGTGTGGAATGTGACTGGTGGTCTCTTGGTGCAATAATGTATGAAATGCTTGTTGGTTATCCACCATTTTATTCTGATGATCCAGTAACAACATGCCGAAAGATTGTGCATTGGAAAAATCACTTAAAATTCCCTGATGAGATAAGATTATCACCTGAAGCAAAAGACATGATCAGTAGGCTGCTTTGCGATGCCGAGAATAGGCTTGGTTCTGGAGGTGCAGACCAAATCAAGGCTCATCCTTGGTTCAAAGATACCGAGTGGGACAAACTCTACGACATGGATGCAGCATTTAAGCCCGAGGTCAATGGGGAACTTGATACGCAAAATTTTATGCAATTTGATGAGGTTGATCCACCGCCAACTAGAACCGGATCTGGACCAATAAGGAAGATGTTGTTGACTCCCAAAGATCTCAATTTTGTTGGTTATACATACAAAAATTTTGAAGCTGTCAAAGGGCTACACCATTCATTTGATTTGATGTCAAACACCACCCCCATTCGAACTTCGTCTATTGACTCTACTAAAAGTGACTCGGCATTGAATAACTACTCTACCACCTACTCACCAGATGACAGGGAAACCATATTGGCATCATCAGGGGATGCTTTGTCACAGTAA | 1614 | 42.32 | MENHQEVEAEEEDEVGPSAVEEEEIGFVGSSLTLEKVAAAKQYIENHYKAQKKHIEERKERRSVLERKLASSDVSEEEQINLLKDLERTETQYMRLKRHKICVEDFNLLTIIGRGAFGEVRLCREKKTGNIYAMKKLKKSEMLSRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLIREETLTETVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKRGHMKLSDFGLCKPLDCTNLSDINENEVLDDENLHDTVDVDESFPGKKSGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEIRLSPEAKDMISRLLCDAENRLGSGGADQIKAHPWFKDTEWDKLYDMDAAFKPEVNGELDTQNFMQFDEVDPPPTRTGSGPIRKMLLTPKDLNFVGYTYKNFEAVKGLHHSFDLMSNTTPIRTSSIDSTKSDSALNNYSTTYSPDDRETILASSGDALSQ | 537 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 30288766 | 30296507 | - | ClCG03G015380.2 | Cla03g01479 | 269979 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla03g01479 | 537 | CDD | STKc_NDR_like | 104 | 477 | - | - | |
Cla03g01479 | 537 | Pfam | Protein kinase domain | 107 | 255 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla03g01479 | 537 | Pfam | Protein kinase domain | 306 | 413 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla03g01479 | 537 | Gene3D | Phosphorylase Kinase; domain 1 | 96 | 191 | - | - | |
Cla03g01479 | 537 | MobiDBLite | consensus disorder prediction | 498 | 518 | - | - | |
Cla03g01479 | 537 | SMART | serkin_6 | 106 | 413 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla03g01479 | 537 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cla03g01479 | 537 | Pfam | Protein kinase C terminal domain | 432 | 476 | IPR017892 | GO:0004674|GO:0005524|GO:0006468 | |
Cla03g01479 | 537 | ProSitePatterns | Protein kinases ATP-binding region signature. | 112 | 135 | IPR017441 | GO:0005524 | |
Cla03g01479 | 537 | Gene3D | Transferase(Phosphotransferase) domain 1 | 192 | 430 | - | - | |
Cla03g01479 | 537 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 13 | 516 | - | - | |
Cla03g01479 | 537 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 414 | 486 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Cla03g01479 | 537 | PANTHER | AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN | 13 | 516 | - | - | |
Cla03g01479 | 537 | ProSiteProfiles | Protein kinase domain profile. | 106 | 413 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla03g01479 | 537 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 225 | 237 | IPR008271 | GO:0004672|GO:0006468 | |
Cla03g01479 | 537 | SMART | pkinase_C_6 | 414 | 478 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Cla03g01479 | 537 | SUPERFAMILY | Protein kinase-like (PK-like) | 88 | 462 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla03g01479 | Cla-Chr3:30288766 | Cla06g01626 | Cla-Chr6:29787123 | 1.41E-58 | dispersed | |
Cla01g00509 | Cla-Chr1:5514895 | Cla03g01479 | Cla-Chr3:30288766 | 2.78E-30 | transposed | |
Cla04g01257 | Cla-Chr4:27694941 | Cla03g01479 | Cla-Chr3:30288766 | 1.95E-09 | transposed | |
Cla06g00671 | Cla-Chr6:8500197 | Cla03g01479 | Cla-Chr3:30288766 | 0 | transposed | |
Cla08g01572 | Cla-Chr8:28373553 | Cla03g01479 | Cla-Chr3:30288766 | 0 | transposed | |
Cla09g00744 | Cla-Chr9:7341099 | Cla03g01479 | Cla-Chr3:30288766 | 0 | transposed | |
Cla03g01479 | Cla-Chr3:30288766 | Cla05g01850 | Cla-Chr5:30387124 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80453 | PF00069 | Pkinase | 4.40E-43 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla03g01479 | K08790 | - | csv:101208238 | 994.956 |