Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01479 ATGGAGAATCATCAAGAGGTTGAAGCCGAGGAAGAAGATGAAGTGGGACCCTCCGCCGTGGAGGAGGAAGAAATTGGATTTGTGGGTTCGAGCTTGACTTTGGAGAAGGTCGCTGCAGCCAAACAGTACATTGAGAATCATTACAAGGCTCAAAAAAAGCACATTGAAGAACGCAAAGAGAGGCGCTCAGTGCTTGAAAGGAAGTTGGCATCTTCAGATGTCTCAGAAGAAGAACAAATTAATCTATTGAAGGATTTGGAGCGCACGGAGACTCAATACATGCGGCTGAAAAGGCATAAAATTTGTGTCGAGGATTTCAACCTTTTGACAATTATTGGGCGAGGTGCTTTTGGGGAGGTCAGACTTTGTCGGGAGAAGAAAACAGGCAACATATATGCCATGAAGAAGCTGAAGAAATCAGAAATGCTCAGCAGAGGACAGGTTGAACATGTCAGAGCTGAAAGGAATTTACTTGCAGAAGTTGCGAGTCACTGCATTGTGAAACTCTATTATTCCTTCCAAGATGCTGAATACTTGTATCTGATCATGGAGTATCTTCCAGGAGGTGACATGATGACTTTACTGATAAGGGAGGAAACTTTGACGGAAACTGTAGCTAGATTTTACATTGCGCAAAGTGTTTTGGCTATAGAGTCAATTCATAAACATAACTACATCCACAGAGACATAAAACCTGATAACCTTCTACTGGACAAAAGGGGTCATATGAAACTCTCTGATTTTGGTCTTTGCAAGCCTCTTGACTGCACAAATCTGTCTGATATAAATGAAAATGAAGTCCTTGATGATGAAAACTTGCACGATACGGTGGATGTGGATGAGAGCTTTCCAGGTAAAAAAAGTGGGAGACGCTGGAAGAGCCCCCTCGAACAACTTCAGCATTGGCAGATTAACAGAAGGAAACTGGCATTTTCCACGGTTGGCACTCCAGATTATATAGCTCCAGAAGTGTTGCTAAAAAAAGGATACGGTGTGGAATGTGACTGGTGGTCTCTTGGTGCAATAATGTATGAAATGCTTGTTGGTTATCCACCATTTTATTCTGATGATCCAGTAACAACATGCCGAAAGATTGTGCATTGGAAAAATCACTTAAAATTCCCTGATGAGATAAGATTATCACCTGAAGCAAAAGACATGATCAGTAGGCTGCTTTGCGATGCCGAGAATAGGCTTGGTTCTGGAGGTGCAGACCAAATCAAGGCTCATCCTTGGTTCAAAGATACCGAGTGGGACAAACTCTACGACATGGATGCAGCATTTAAGCCCGAGGTCAATGGGGAACTTGATACGCAAAATTTTATGCAATTTGATGAGGTTGATCCACCGCCAACTAGAACCGGATCTGGACCAATAAGGAAGATGTTGTTGACTCCCAAAGATCTCAATTTTGTTGGTTATACATACAAAAATTTTGAAGCTGTCAAAGGGCTACACCATTCATTTGATTTGATGTCAAACACCACCCCCATTCGAACTTCGTCTATTGACTCTACTAAAAGTGACTCGGCATTGAATAACTACTCTACCACCTACTCACCAGATGACAGGGAAACCATATTGGCATCATCAGGGGATGCTTTGTCACAGTAA 1614 42.32 MENHQEVEAEEEDEVGPSAVEEEEIGFVGSSLTLEKVAAAKQYIENHYKAQKKHIEERKERRSVLERKLASSDVSEEEQINLLKDLERTETQYMRLKRHKICVEDFNLLTIIGRGAFGEVRLCREKKTGNIYAMKKLKKSEMLSRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLIREETLTETVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKRGHMKLSDFGLCKPLDCTNLSDINENEVLDDENLHDTVDVDESFPGKKSGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEIRLSPEAKDMISRLLCDAENRLGSGGADQIKAHPWFKDTEWDKLYDMDAAFKPEVNGELDTQNFMQFDEVDPPPTRTGSGPIRKMLLTPKDLNFVGYTYKNFEAVKGLHHSFDLMSNTTPIRTSSIDSTKSDSALNNYSTTYSPDDRETILASSGDALSQ 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30288766 30296507 - ClCG03G015380.2 Cla03g01479 269979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01479 537 CDD STKc_NDR_like 104 477 - -
Cla03g01479 537 Pfam Protein kinase domain 107 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01479 537 Pfam Protein kinase domain 306 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01479 537 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Cla03g01479 537 MobiDBLite consensus disorder prediction 498 518 - -
Cla03g01479 537 SMART serkin_6 106 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01479 537 MobiDBLite consensus disorder prediction 1 20 - -
Cla03g01479 537 Pfam Protein kinase C terminal domain 432 476 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cla03g01479 537 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Cla03g01479 537 Gene3D Transferase(Phosphotransferase) domain 1 192 430 - -
Cla03g01479 537 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 516 - -
Cla03g01479 537 ProSiteProfiles AGC-kinase C-terminal domain profile. 414 486 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cla03g01479 537 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 13 516 - -
Cla03g01479 537 ProSiteProfiles Protein kinase domain profile. 106 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01479 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Cla03g01479 537 SMART pkinase_C_6 414 478 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cla03g01479 537 SUPERFAMILY Protein kinase-like (PK-like) 88 462 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01479 Cla-Chr3:30288766 Cla06g01626 Cla-Chr6:29787123 1.41E-58 dispersed
Cla01g00509 Cla-Chr1:5514895 Cla03g01479 Cla-Chr3:30288766 2.78E-30 transposed
Cla04g01257 Cla-Chr4:27694941 Cla03g01479 Cla-Chr3:30288766 1.95E-09 transposed
Cla06g00671 Cla-Chr6:8500197 Cla03g01479 Cla-Chr3:30288766 0 transposed
Cla08g01572 Cla-Chr8:28373553 Cla03g01479 Cla-Chr3:30288766 0 transposed
Cla09g00744 Cla-Chr9:7341099 Cla03g01479 Cla-Chr3:30288766 0 transposed
Cla03g01479 Cla-Chr3:30288766 Cla05g01850 Cla-Chr5:30387124 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80453 PF00069 Pkinase 4.40E-43 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01479 K08790 - csv:101208238 994.956