Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01510 ATGGAGAAGGGTGATCTAGATGTGGCTGGGAAAGTGGTGGTTGTCGCCATTAAAGCCACCTCGAAGGAAGTTTCTAAGGCTGCTCTCGTTTGGGCTTTGACGCATGTTGTTCAGCCTGGAGATCATATTAAGCTCCTTGTGGTTATCCCTTCTCATCAATCAAGTAAATGGATGCGGGGATTTTCTCGACTTACTAGCGACTGTGCGATCGGTCATCTGAGAACTCCTTCAGGAACTTTTTCCGATCGGAAGAATGACATTGTGCATTCATGTTCTCAGATGGTACATCAGCTTCATGGTGCATATGACCCACTGAAGATAAAAGTCAGGATCAAAATTCTTTCTGGTTTGGCTCGGGGTATGGTGGCTACTGAAGCTAAGAAAGCTCAATCGAACTGGGTGATATTGGATAAGAATTTGAAAGATGAAAGGAAAAACTGTTTGGAAGAGCTGCAATGCAATGTTGTTCTTATGAAGAAATCTCAGCCTAAGGTTCTTCGTCTGAATTTGATGGAATCCCCTAAAATAAATACTAGAGAACCTTGGGTACCATCACATGAATTAGATGTTTCTCAGAAGTGTCTTAAAAGCTATTTCGATGAATCGATCATGTTTAGGGCTCCTGATGTGACTCCTGACAGTACTCCTGATGTAGAGTCTCCTCTTACCGTAACTGATATTGGAACATCATCAATATCGAGCTCAGATGTAGGCAGTTCATCCTTGTTCTCTGGGATTTGTGGCAGCTTGAGAAATGAATCCAGAACAGCAGCCGACGGAGGGAGAAATATGTCTGGTTCTGAATATGATTCTGAGAGCGAAAAGCAAACTCCCTCAGTTTCGTATTTCCAGCGTTGTATGGTTGATATCATAAGTTCCAGGCGTAAATTCCAGCAACACGCAATGGAAGAATCACAAAATGCTCATCATAGACCTCCGGCTCCAACACGTCAAGGTCTGGTAAAAAAAATGCCTAATCTTTCTCTAGAACCTAGCACTGATGTGGCGCATTGCAATACCGAAATTAGCTCAAGCAGAAACATAAGGAACACGGTTTCGTTATCCAGAAAAGCACCTCTAGGCCCTCCTCCGCTGTGTTCTATGTGTCAACACAAGGCCCCTGCATTTGGGAATCCTCCTAGATGGTTCACTTATGCTGAACTTGAAGTCGCTACAAGTGGGTTTGCACAAACAAATTTTTTGGCTGAGGGTGGATTTGGTTCTGTGCACCGAGGCGTCTTATCAGATGGACAAGTCGTTGCTGTCAAGCAATATAAACTGGCTAGTACCCAGGGAGATCGAGAGTTTTGTTCAGAAGTTGAGGTCTTAAGTTGTGCCCAACATCGGAACGTCGTGATGCTCATTGGATTTTGTGTGGAGGGTGGAAGAAGGTTACTTGTTTATGAATATATTTGCAATGGATCTCTTGATTCCCATCTATATGGGAGAAATCGTGATCCACTGAAATGGTCTGCACGACAAAAGATTGCAGTCGGGGCTGCTCGAGGATTGAGATACCTTCACGAAGAATGTAGAGTGGGCTGTATTGTGCACCGTGATATCCGCCCAAACAATATCCTCCTTACTCATGATTTCGAGCCACTAGTCGGAGATTTTGGGCTGGCAAGGTGGCAGCCGGATGGCGACCTAGCAGTAGAAACTAGAATCCTTGGGAGATTTGGCTACCTGGCTCCAGAGTATGCACAGAGTGGCCAAATCACAGAGAAAGCTGATACATACTCGTTTGGCGTAGTGCTGCTGGAACTCGTGACTGGACGCAAAGCGATTGATTTAAATCGTCCCAAGGGCCAGCAATGCCTCACTGAATGGGCGCGAAACCTGTTGCGGAAAGATGCGATCTCCGAACTAGTCGATCCATGTTTGAGGAACTGTTATTCAGACAAGGAAGTTCACCGAATGCTGCAATGCGCTTCCTTGTGCATCAAGCGCGATCCATACGTAAGACCGCGCATGTCTCAGATCTTGGACGCTGATCTTATGAACACTGTATCGGACGGCTCGCAATCCAACGCTTTCTTCGTCGAGTCTCCGGCGACCAGAGGAGTCAATACTCCCTCCGCCACTCTCAACTTCCCGCCGATGCAGTCGCTTTTTAAACCTCGCCGCTCATTTTGCTCCTTCAATCACTTCTACCGCTCATCAACTTTCGTTTCGGGAGACGCAACATCGGAAACTACCGTTGGAAGAAGCTCAACATTCATCCATCCAACTGCTGTTGTACATCCGAATGCCGTAATTGGCGAGGATGGGTATATTGGTCCATTCTGTACTGTGGGAGCCTTCGCAAAGCTGGGAAATGGTTGTCAGTTGTATCCTGGGAGCCACATTTTTGGCTTTACAGAACTAGGGGATCAATGTGTCTTGATGACTGGCGCTATAGTTGGTGAGGACCTTCCTGGTCGCACAGTCATTGGGTGTAATAACAAAATAGGTCACCATGCAGTGGTTGGCATTAGATGTCAAGACATGAAATACAAGCCAGGAGAAGAATGTTTTCTTGATATTGGAGATAACAATGACGTAAGAGAACATTCATCAATCCACCGGTCTTCGAAGTCCAGTGATGTGACGGCTATTGGTGATAACAATCTCATAATGGGATCCTGTCATATTGCTCATGATTGCAAGATTGGTAACAACAATATTTTTGCAAATAATACTCTCTTAGCCGGCCACGTTGTGGTGGAGATCATTGGCTTGAGAACTGCTTACAGGAAGATATTCATGTCTACTGATACAAATTCTAAAGGGTTGGAAGAACGTCTCAAGGAAGTGGAACAGCATGAAAAGTTGGCTCACATATCTTCAGTGCGTTCCATGATTCAGTCAATTCGTGCGTCATTTGAACAAAATCGTCGGGGCATATGCAAATTCAGACTATGGAGTGGCTCTTAA 2916 45.27 MEKGDLDVAGKVVVVAIKATSKEVSKAALVWALTHVVQPGDHIKLLVVIPSHQSSKWMRGFSRLTSDCAIGHLRTPSGTFSDRKNDIVHSCSQMVHQLHGAYDPLKIKVRIKILSGLARGMVATEAKKAQSNWVILDKNLKDERKNCLEELQCNVVLMKKSQPKVLRLNLMESPKINTREPWVPSHELDVSQKCLKSYFDESIMFRAPDVTPDSTPDVESPLTVTDIGTSSISSSDVGSSSLFSGICGSLRNESRTAADGGRNMSGSEYDSESEKQTPSVSYFQRCMVDIISSRRKFQQHAMEESQNAHHRPPAPTRQGLVKKMPNLSLEPSTDVAHCNTEISSSRNIRNTVSLSRKAPLGPPPLCSMCQHKAPAFGNPPRWFTYAELEVATSGFAQTNFLAEGGFGSVHRGVLSDGQVVAVKQYKLASTQGDREFCSEVEVLSCAQHRNVVMLIGFCVEGGRRLLVYEYICNGSLDSHLYGRNRDPLKWSARQKIAVGAARGLRYLHEECRVGCIVHRDIRPNNILLTHDFEPLVGDFGLARWQPDGDLAVETRILGRFGYLAPEYAQSGQITEKADTYSFGVVLLELVTGRKAIDLNRPKGQQCLTEWARNLLRKDAISELVDPCLRNCYSDKEVHRMLQCASLCIKRDPYVRPRMSQILDADLMNTVSDGSQSNAFFVESPATRGVNTPSATLNFPPMQSLFKPRRSFCSFNHFYRSSTFVSGDATSETTVGRSSTFIHPTAVVHPNAVIGEDGYIGPFCTVGAFAKLGNGCQLYPGSHIFGFTELGDQCVLMTGAIVGEDLPGRTVIGCNNKIGHHAVVGIRCQDMKYKPGEECFLDIGDNNDVREHSSIHRSSKSSDVTAIGDNNLIMGSCHIAHDCKIGNNNIFANNTLLAGHVVVEIIGLRTAYRKIFMSTDTNSKGLEERLKEVEQHEKLAHISSVRSMIQSIRASFEQNRRGICKFRLWSGS 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30698263 30713679 - ClCG03G015740.1 Cla03g01510 270010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01510 971 SUPERFAMILY Protein kinase-like (PK-like) 378 675 IPR011009 -
Cla03g01510 971 SMART tyrkin_6 395 667 IPR020635 GO:0004713|GO:0006468
Cla03g01510 971 Pfam Bacterial transferase hexapeptide (six repeats) 866 897 IPR001451 -
Cla03g01510 971 Gene3D Hexapeptide repeat proteins 734 805 - -
Cla03g01510 971 CDD STKc_IRAK 401 662 - -
Cla03g01510 971 Gene3D Transferase(Phosphotransferase) domain 1 471 679 - -
Cla03g01510 971 SUPERFAMILY Trimeric LpxA-like enzymes 736 902 IPR011004 -
Cla03g01510 971 Gene3D Phosphorylase Kinase; domain 1 366 470 - -
Cla03g01510 971 PANTHER - 11 662 - -
Cla03g01510 971 MobiDBLite consensus disorder prediction 253 276 - -
Cla03g01510 971 ProSiteProfiles Protein kinase domain profile. 395 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01510 971 ProSitePatterns Tyrosine protein kinases specific active-site signature. 516 528 IPR008266 GO:0004672|GO:0006468
Cla03g01510 971 Gene3D Hexapeptide repeat proteins 806 901 - -
Cla03g01510 971 PANTHER OS01G0253100 PROTEIN 11 662 IPR045271 GO:0004714|GO:0006468
Cla03g01510 971 Gene3D - 902 971 IPR037157 -
Cla03g01510 971 Pfam Protein tyrosine and serine/threonine kinase 399 662 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01510 Cla-Chr3:30698263 Cla05g01971 Cla-Chr5:31514001 8.98E-36 dispersed
Cla03g01510 Cla-Chr3:30698263 Cla07g01296 Cla-Chr7:30096135 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80455 PF07714 PK_Tyr_Ser-Thr 3.50E-41 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01510 - - csv:101208373 1252.27