Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla03g01526 | ATGATTATCAGTGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCATTAACGATACCAGAGGAACCTCCTGCAAGCGAGACGCGGTTTGCTTTTCCTCTGAGTGGAATCTCGGTGAGTTCTGATGGCAATGCCAATGGCGGTGATTATTCTCCTTATTATCTCCAGGAAGCCCTAGCGGCACTTCAGCGATATACGAACGAGTCGGAGATTGAATCTGATTCGGAGTTGTCCGGACGGGAATCGGACGTTCCGGTGGATGCTTATTCTTGCGATCATTTTCGGATTTTTGAGTTCAAGGTGAGGAAGTGTACGCGTGGACGGTCTCATGATTGGACGGAGTGTCCGTACGCTCATCCAGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTATCATTACTCTGGTACGGCGTGCCCTGACTTTCGAAAAGGTAGCTGTAAGAAAGGCGATTCGTGCGAGTTTGCGCATGGTGTTTTTGAGTGTTGGCTTCATCCTACTCGTTACAGGACTCAGCCATGTAAGGACGGAACCAACTGTCGAAGAAGAGTCTGTTTCTTCGCCCATACTCCTGAACAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAAGCGCGAACTCGCCTGAGTCGTATGATGAATCTCCACTTCGGCAGTCTTTGGATGGATCCTGTGCTAAATCGCTGCCGTTTCTGTCTTCTCCGGTGTCTGTTTCACCAACAGCGACTCCGGTGGATTCCCCACCGTTATCGCCCATGACTCGGTCTCTCGGCCGGTCCCTGGGCTCGAGTTCCATCAATGAAATGGTCGCATCTCTCCGGAACTTGCATCTAAGCAAGGTCAAATCCCTGCCATCTTCCTGGAATGTTCAAATTGGATCTCCTGGTTACCCGTCTCGAGTCTGCCATGGATTTTGTAGCCTTCCAACAACACCAACTCGGGCTCCAACTGGTCATGGAGTTGGACTGCTCGACTTCTCGGAGCATGGATTTGAGGAGGAACCGGCGATGGAGCGAGTTGAGTCGGGAAGGGAGCTGAGGGCGAAGATGCTGGAGAAACTGAGCAAGGAAAATTCTCTGGACCTGGCTGATTCAAATCCTTCAGCCTGCACACCAGATGTTGGATGGGTATCAGAGCTGGTGAAGAAAAAAATTAGCCTAAGCCAAGCCAAGCCTTTGATATGTAAATACACAAAATGGGAGGCAACTGAAACTGGGAAGAAAACAGGATTTAATTTTTACTTGTGTAAGCCTTAA | 1257 | 50.68 | MIISERHRPGPVVHITPLTIPEEPPASETRFAFPLSGISVSSDGNANGGDYSPYYLQEALAALQRYTNESEIESDSELSGRESDVPVDAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPTRYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSANSPESYDESPLRQSLDGSCAKSLPFLSSPVSVSPTATPVDSPPLSPMTRSLGRSLGSSSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFSEHGFEEEPAMERVESGRELRAKMLEKLSKENSLDLADSNPSACTPDVGWVSELVKKKISLSQAKPLICKYTKWEATETGKKTGFNFYLCKP | 418 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 30903917 | 30906517 | + | ClCG03G015890.2 | Cla03g01526 | 270026 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla03g01526 | 418 | Gene3D | - | 134 | 198 | - | - | |
| Cla03g01526 | 418 | ProSiteProfiles | Zinc finger C3H1-type profile. | 135 | 161 | IPR000571 | GO:0046872 | |
| Cla03g01526 | 418 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 139 | 159 | IPR000571 | GO:0046872 | |
| Cla03g01526 | 418 | SMART | c3hfinal6 | 134 | 160 | IPR000571 | GO:0046872 | |
| Cla03g01526 | 418 | SMART | c3hfinal6 | 169 | 192 | IPR000571 | GO:0046872 | |
| Cla03g01526 | 418 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 9 | 382 | - | - | |
| Cla03g01526 | 418 | MobiDBLite | consensus disorder prediction | 236 | 257 | - | - | |
| Cla03g01526 | 418 | PANTHER | UNKEMPT FAMILY MEMBER | 9 | 382 | IPR045234 | - | |
| Cla03g01526 | 418 | MobiDBLite | consensus disorder prediction | 197 | 221 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g01906 | Cla-Chr2:34204310 | Cla03g01526 | Cla-Chr3:30903917 | 1.97E-56 | dispersed | |
| Cla03g01526 | Cla-Chr3:30903917 | Cla08g01651 | Cla-Chr8:29168801 | 3.84E-80 | dispersed | |
| Cla07g00238 | Cla-Chr7:2631716 | Cla03g01526 | Cla-Chr3:30903917 | 1.82E-66 | transposed | |
| Cla11g00173 | Cla-Chr11:2031284 | Cla03g01526 | Cla-Chr3:30903917 | 9.22E-160 | wgd | |
| Cla03g01526 | Cla-Chr3:30903917 | Cla05g01812 | Cla-Chr5:30072712 | 2.27E-111 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60854 | PF00642 | zf-CCCH | 1.90E-06 | CL0537 | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla03g01526 | - | - | csv:101204432 | 738.413 |