Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01548 ATGACGAAATCTCTTCCTTCTCTTTCTCTTTCTCTTCTCTGTTTTCTAAAACCCATTTCCTTCTTCTTCTTCCTCCTCCTCCTCTGTTCCCACCATGCCAATTCCCAGCTCTACCAACAAGAACACTCTGTTTTACTCCGATTGAACCAGTTTTGGCAAAACCAAGCCCCAATCAGCCATTGGCTCTCCTCGAATGCTTCGCATTGTACATGGCCGGAGATTCAGTGCACCAACAACTCTGTCACTGCTCTGTTTTTCTCTAACTACAATTTGAACGGAACCTTCCCCCCTTTCCTTTGCGATCTCAACAATCTCACCCACCTTGATCTTCAGCTCAATTTCATCATAGGTGGCTTTCCCACCACTCTTTACAATTGTTCGAACCTTAATTACCTTGACCTCTCTCAGAATTACTTCGCCGGGCCGATTCCCGATGATGTCGACCGCTTGTCTCGCCTCCAGTTTCTTAATCTCGGCGGGAACAGCTTCTCCGGCGAAATTCCGGTATCTATTTCTCGGTTGTCGGAACTCCGGCACCTTTATCTTTTTGTGAATAAATTCAATGGGACTTACCCATCTGAAATTGGTAACTTGTTGAATCTGGAAGAATTGTTGATGGCTTACAATTCAAATCTACAACCGGCTGAATTGCCTTCCAGTTTCGCACAATTGAAGAAGTTGACTTATTTATGGATGACAAAGTCGAACGTAATCGGTGAAATTCCTGAATGGATTGGAAATTTGACCGCCCTCGTGAAATTGGATTTGTCGAAGAACAATTTGACTGGGAAAATCCCCGGCAGTTTGTTTACGTTGAAGAATCTCAGTGTCGTTTATCTGTTTCAGAACAATCTATCAGGAGAAATTCCTCAGCGGATTGATTCTAAAAAAATCACCGAATACGACTTATCGGAAAATAATTTGACCGGAAGAATTCCGGCGGCTATCGGCGATCTACAGGAACTGACGGCTCTGCTTCTGTTTTCAAATCAGTTATATGGAGAAATCCCAGAAAGCATCGGCCGTCTTCCATTATTAACAGACGTCAGATTGTTCGACAACAATTTAAACGGTACACTGCCGCCAGATTTCGGCCGGAATTTGATCCTCGAAGGTTTTCAAGTGAATTCCAATAAGCTCACCGGAAGCTTGCCGGAGCACTTGTGCGCCGGCGGTAAGCTCATAGGAGTGACTGCTCAAGAGAATAATCTTAGTGGGGAGTTACCAAAATCGCTTGGGAATTGCGATAGCTTGATCATTGTCGATGTTCATAAGAACAATTTTTCAGGGGAAATTCCTGCCGGTCTATGGACGGCTCTGAATTTGACTTATGTAGTCATGAACAACAATTCTTTCACAGGTGATTTTCCTCAGAGAGTCTCGAAGAATCTTGCGAGATTGCAAACTAGCAACAACAAATTTTCAGGGGAAATTCCATCGGATTTATCTTCATTTTGGAATTTGACTGAGTTTGAAGCAAGCAATAATCTGTTGACGGGACAAATTCCTGAAGAACTCACTGCTCTTTCAAAGTTGAACAAGCTTTCGCTTGATGGAAATCAACTCACTGGGGAGCTTCCAAAGAATATCCTTTCATGGAGATTATTGCAGAGTCTTAAACTGAGTCGAAATCGTCTTTCGGGTGAAATACCGGACCAACTTGGCGATTTACCCAACCTTAATGATCTTGATCTCTCGGAGAATCGACTTTCCGGGACGATTCCGACTGAGCTAGGAAAATTGAAACTGAATTTCCTTGACCTCTCTTCAAATTTTCTGTCTGGGACAATCCCATCTGCATTTGAAAATGCAATCTTTGCAAGAAGCTTTTTGAACAATCCAAGTCTTTGTTCGAACAACGCAGTTCTAAATCTCGATGGCTGCAGTTTGAGAACTCAGAATTCGAGAAAGATTTCATCACAGCATCTTGCTCTGATCGTAAGCTTGGGCGTAATAGTATTCATACTCTTTGTAGTTTCTGCTTTGTTCATAATCAAAATCTACAGGAAAACTGGAAATAGAGCAGACGTTGAATGGAAACTGACCTCATTTCAAAGGCTGAATTTCTCGGAGGCAAATCTTTTATCTGGGCTATCGGAGAACAACGTGATTGGGAGCGGTGGATCCGGAAAAGTTTATCGGATCCCGGTGAATAGTTTGGGCGAAACAGTGGCTGTGAAGAAGATATGGAACAACAGAAAGTCAGACCACAAGCTCGAGAAAGAATTCATGGCGGAAGTGAAAATCCTCAGTTCGATTCGACACAACAACATAATCAAACTCCTCTGCTGCGTTTCCTGCGAGACTTCGCGGCTCCTCGTTTACGAGTACATGGAGAAGCAAAGCCTCGACAAATGGCTACACAAGAAGAAGAACTCACCGCCGATAATTACAGGGTCGGACCCTATTTGTGGTGTCGCCCTCGATTGGCCAACAAGATTTCAAATTGCAGTAGGGGCAGCACAAGGCCTCTGTTATATGCACCATGAATGCTCCCCGCCGGTGATTCATAGAGACTTGAAGTCCAGCAATATCTTACTGGATTCAGAATTCAATGCCAAAATAGCAGATTTTGGCTTAGCTAAAATGCTCGTAAAGCAAGGGGAATCGGCTTCAGTCTCCGCCGTTGCCGGCTCTTTTGGATACATGGCTCCAGAGTATGCTCAGACACCAAGAATCAACGAGAAGATCGATGTATTTAGCTTTGGAGTCATTCTTCTGGAGTTGGCAACCGGGAAGGAAGCTCTCAACGGCGATGCAGACTCGTCTCTGGTGGAGTGGGCTTGGGAGTATATTCAAGAAGGCAAGGCAATAGACGATGCGTTGGATAAGGATGTGAAGGAGCCAAATTATGTTGATGAAATGTGTAGTGTTTTCAAACTGGGTGTGATCTGCACTTCCACTTTGCCCACCAACCGCCCCACCATGAACCAGGCATTGCAAATCTTGATCCGCACTCGGACCTCCGCACCCCAAACCCATGGAGATAAAAAATAG 2997 44.21 MTKSLPSLSLSLLCFLKPISFFFFLLLLCSHHANSQLYQQEHSVLLRLNQFWQNQAPISHWLSSNASHCTWPEIQCTNNSVTALFFSNYNLNGTFPPFLCDLNNLTHLDLQLNFIIGGFPTTLYNCSNLNYLDLSQNYFAGPIPDDVDRLSRLQFLNLGGNSFSGEIPVSISRLSELRHLYLFVNKFNGTYPSEIGNLLNLEELLMAYNSNLQPAELPSSFAQLKKLTYLWMTKSNVIGEIPEWIGNLTALVKLDLSKNNLTGKIPGSLFTLKNLSVVYLFQNNLSGEIPQRIDSKKITEYDLSENNLTGRIPAAIGDLQELTALLLFSNQLYGEIPESIGRLPLLTDVRLFDNNLNGTLPPDFGRNLILEGFQVNSNKLTGSLPEHLCAGGKLIGVTAQENNLSGELPKSLGNCDSLIIVDVHKNNFSGEIPAGLWTALNLTYVVMNNNSFTGDFPQRVSKNLARLQTSNNKFSGEIPSDLSSFWNLTEFEASNNLLTGQIPEELTALSKLNKLSLDGNQLTGELPKNILSWRLLQSLKLSRNRLSGEIPDQLGDLPNLNDLDLSENRLSGTIPTELGKLKLNFLDLSSNFLSGTIPSAFENAIFARSFLNNPSLCSNNAVLNLDGCSLRTQNSRKISSQHLALIVSLGVIVFILFVVSALFIIKIYRKTGNRADVEWKLTSFQRLNFSEANLLSGLSENNVIGSGGSGKVYRIPVNSLGETVAVKKIWNNRKSDHKLEKEFMAEVKILSSIRHNNIIKLLCCVSCETSRLLVYEYMEKQSLDKWLHKKKNSPPIITGSDPICGVALDWPTRFQIAVGAAQGLCYMHHECSPPVIHRDLKSSNILLDSEFNAKIADFGLAKMLVKQGESASVSAVAGSFGYMAPEYAQTPRINEKIDVFSFGVILLELATGKEALNGDADSSLVEWAWEYIQEGKAIDDALDKDVKEPNYVDEMCSVFKLGVICTSTLPTNRPTMNQALQILIRTRTSAPQTHGDKK 998
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31134582 31137668 - ClCG03G016120.2 Cla03g01548 270048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01548 998 PRINTS Leucine-rich repeat signature 251 264 - -
Cla03g01548 998 PRINTS Leucine-rich repeat signature 557 570 - -
Cla03g01548 998 ProSitePatterns Protein kinases ATP-binding region signature. 704 728 IPR017441 GO:0005524
Cla03g01548 998 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 21 990 - -
Cla03g01548 998 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 21 990 - -
Cla03g01548 998 SUPERFAMILY L domain-like 58 385 - -
Cla03g01548 998 ProSiteProfiles Protein kinase domain profile. 698 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01548 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 835 847 IPR008271 GO:0004672|GO:0006468
Cla03g01548 998 Gene3D Transferase(Phosphotransferase) domain 1 778 997 - -
Cla03g01548 998 CDD STKc_IRAK 704 985 - -
Cla03g01548 998 SUPERFAMILY Protein kinase-like (PK-like) 693 983 IPR011009 -
Cla03g01548 998 Gene3D Ribonuclease Inhibitor 295 464 IPR032675 -
Cla03g01548 998 SUPERFAMILY RNI-like 302 651 - -
Cla03g01548 998 Gene3D Ribonuclease Inhibitor 38 189 IPR032675 -
Cla03g01548 998 Gene3D Ribonuclease Inhibitor 465 533 IPR032675 -
Cla03g01548 998 Gene3D Ribonuclease Inhibitor 534 617 IPR032675 -
Cla03g01548 998 Gene3D Ribonuclease Inhibitor 190 294 IPR032675 -
Cla03g01548 998 Pfam Leucine rich repeat 104 162 IPR001611 GO:0005515
Cla03g01548 998 Pfam Leucine rich repeat 535 591 IPR001611 GO:0005515
Cla03g01548 998 Gene3D Phosphorylase Kinase; domain 1 680 777 - -
Cla03g01548 998 SMART LRR_typ_2 557 581 IPR003591 -
Cla03g01548 998 SMART LRR_typ_2 509 533 IPR003591 -
Cla03g01548 998 SMART LRR_typ_2 150 174 IPR003591 -
Cla03g01548 998 SMART LRR_typ_2 319 343 IPR003591 -
Cla03g01548 998 SMART LRR_typ_2 248 272 IPR003591 -
Cla03g01548 998 Pfam Protein kinase domain 700 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01548 998 SMART serkin_6 698 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01548 Cla-Chr3:31134582 Cla10g00774 Cla-Chr10:14594346 0 dispersed
Cla03g01548 Cla-Chr3:31134582 Cla08g01205 Cla-Chr8:24958351 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80457 PF00069 Pkinase 4.20E-49 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01548 - - csv:101214935 1691.78