Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla03g01558 | ATGGATCCTCGCAACGACGCCGTTTTCCCCGACGAAGACCTCGAGGACGACGAGGAATCCCTCGACGACGAAGACGACGACGAAGAGGAGGAGGAATTGAACGACGATCCTTCTCCTTCCACTTCCTCCGCCGGCGCCGTTCCTGTCCCTTCCGTCTCCGCTACCGTCACCGTCGCCACTCCTGCCGTCTCCGTTGTTCCTCCTCCTTCGATTGTTTCAATCTCCTCTGCCGATCTGATACGCCAGCGCCTCGAGACCGCCACCGCCGAGCCTTTGACCTTGCAGGGGGAGAAGAAGCCCTTGGATGAGTCCAGGAAGTTGTTTCAACGCCTTTGGACCGATGAGGATGAGATCGAGCTTTTGCAGGGGTTTTTGGACTACACGATGCAGCGTGGTACGACTCATCATCATCAGAACGATACGGCGTTGTTTTACGACCAGATCAAGTCGAAATTACAGCTGGATTTTAACAAGAATCAGCTCGTTGAGAAGCTTCGGAGGTTGAAGAAGAAATATCGCAACGTTATTGGTAAGATTAGCTCTGGTAAGGACTTCAATTTCAAAAGCCCTCACGATCAGGCTACGTTTGAGATTTCTCGCAAGATCTGGAGCAATACCGGCCGAATTGGAGTCGACGACAACGCTTTAGACGATGACGAACCTGCTGCTCCGACTCCGTATGCTAGCTACATGGACCACAGAAACGAAGAGATGATGGCGAATTGCGCAGAGAAGAAACCGACGCCGACTCCGAAATCGCGGAAGCGCACACGGCCTGGATCGGGAATTAGAATGGACGTTCCGCGTTCGTCTAATGAGAATTTGAGTAAAGAGAAAAACAGTACCTACCACAACAACACCAACAACAACGAAAATGTCAATAACGTAGCGGTAGCAGGATTGATCGAGGAGACGGTGAGGAGCTGCCTGTCGCCATTGTTTAAGGAATTGCTGAATACTTCCATGGGAGGAGGGCTCTGTGGTGGAAGCAGAGGGTTTAGTGGATTGGCTTCGCATCCGATTCCATTGAGCTTCGGTGGTGCTTCCATCAATTTCGGAGGTGGAGGTGAAATGGCGGATGAGAGGTGGAGGAAGCAGCAGATTTTGGAACTGGAAGTTTATTCGAAGAGGTTGGAGTTGGTTCAAGAACAAATTAAGACGGCATTAGAAGACTTGAGGTCCATGGGAGGCTGA | 1194 | 51.26 | MDPRNDAVFPDEDLEDDEESLDDEDDDEEEEELNDDPSPSTSSAGAVPVPSVSATVTVATPAVSVVPPPSIVSISSADLIRQRLETATAEPLTLQGEKKPLDESRKLFQRLWTDEDEIELLQGFLDYTMQRGTTHHHQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVIGKISSGKDFNFKSPHDQATFEISRKIWSNTGRIGVDDNALDDDEPAAPTPYASYMDHRNEEMMANCAEKKPTPTPKSRKRTRPGSGIRMDVPRSSNENLSKEKNSTYHNNTNNNENVNNVAVAGLIEETVRSCLSPLFKELLNTSMGGGLCGGSRGFSGLASHPIPLSFGGASINFGGGGEMADERWRKQQILELEVYSKRLELVQEQIKTALEDLRSMGG | 397 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 31273033 | 31274226 | + | ClCG03G016240.1 | Cla03g01558 | 270058 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla03g01558 | 397 | Coils | Coil | 158 | 178 | - | - | |
| Cla03g01558 | 397 | Coils | Coil | 371 | 391 | - | - | |
| Cla03g01558 | 397 | Pfam | Protein of unknown function, DUF573 | 108 | 204 | IPR007592 | GO:0006355 | |
| Cla03g01558 | 397 | MobiDBLite | consensus disorder prediction | 267 | 291 | - | - | |
| Cla03g01558 | 397 | PANTHER | BNAANNG10740D PROTEIN-RELATED | 2 | 396 | IPR007592 | GO:0006355 | |
| Cla03g01558 | 397 | Coils | Coil | 14 | 34 | - | - | |
| Cla03g01558 | 397 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
| Cla03g01558 | 397 | MobiDBLite | consensus disorder prediction | 242 | 291 | - | - | |
| Cla03g01558 | 397 | MobiDBLite | consensus disorder prediction | 9 | 36 | - | - | |
| Cla03g01558 | 397 | PANTHER | BNAANNG10740D PROTEIN | 2 | 396 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g02182 | Cla-Chr1:35877690 | Cla03g01558 | Cla-Chr3:31273033 | 7.47E-29 | dispersed | |
| Cla02g00163 | Cla-Chr2:1711715 | Cla03g01558 | Cla-Chr3:31273033 | 1.23E-20 | dispersed | |
| Cla02g01611 | Cla-Chr2:30855334 | Cla03g01558 | Cla-Chr3:31273033 | 1.23E-48 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60857 | PF04504 | DUF573 | 1.40E-34 | CL0123 | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla03g01558 | - | - | csv:101219457 | 578.941 |