Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01564 ATGAAACACATTTTCAAGAAGTTTCATATAGGAAGCAATCACGAGCCGAATCGGACCAACGAGAATCCGTCGCCTGTAGCCGCGTCGTCCTCACCATGTGTTTCTGATAATCGTCCTGCAACTGCTCCGGGTCAGACTTCCGGCAACTCTCCGTCCAGTCCTTCATCGTCGCCATCGCTGGCAACAACTCCTCCAGGGGGTGGAAGCGTTACTCCGGTTTCGGTGCCTCCCAATCGCTCCGATTACTTTTCTTCAGAGGAGGAGTTTCAGGTTCAGCTTGCCCTAGCTATTAGCGCCTCGAATTCGGACTTCCGGGATGATCCGGAGAAGGATCAAATTCGAGCTGCGACACTTTTGAGCTTAGGAAATCATCGGATTGATTCCACTGCCAGGGACCAGGGAGATGCTGCTGAGGTGCTCTCGAGACAATATTGGGAATACAATCTGCTTGACTATGAAGAAAAAGTGGTCAATGGGTTTTATGATGTCCTTTCTACGGATTCGGCAGTCCAAGGAAAAATTCCATCCCTATCTGATATTGAAGCAAGCTTTGGTAGTTCTGGCTTTGAAGTCGTGATGGTCAATATGACCGTTGATCCTGCACTAGAAGAGCTAGTGCAAATTGCTCAATGTATTGCAGATTGCCCTGGCACTGAGGTCAGGGTTTTGGTTCAGAGGCTTGCTGAGCTTGTTATGGGACATATGGGGGGACCTGTAAAGGATGCCCATTTTATGCTAGCAAGGTGGATGGAAAGAAGCACAGAGTTAAGGACTTCTCTTCACACCAGTGTATTGCCCATTGGTTCCATTAATATTGGCCTCTCAAGACACCGTGCGTTACTTTTCAAGGTGTTAGCTGACAGTATCAAGATGCCTTGTAGGCTTGTTAAAGGTAGTCACTATACTGGTGTTGAAGAAGATGCTGTCAACATTGTAAAGTTGGAGGATGAAAGGGAGTTTTTGGTTGATCTAATGGCAGCTCCTGGAACACTTCTACCGGCAGACACATTTAGTGCGAAGGACACTACTAACTTTAATCCGTACAACCCCAAAGTAAGCAAAATTCCTTCTCTTCGCCACTCCAATGATGTTGGAATTTCTTCTGCAAAACCAACATCAGCACTTGAGGAAGGCAGCAGTCAGAACTTTGAGGCGGAGGCCATCTCACTGGTGGATGGGAAACTGAGCTATGGAAGGACAGAGTCTGTGCCGTCCAGCTCAGGTACTGGGACTTCTCGATGCAAGGGAGCCCATTTTGGTGAGGGTAATGCTAGACTGAATGTCAATGTAGTTCCATTTGGTCAAAGCTCCGAGGATTCCAAAAATCTTTTTGCGGATCTTAATCCTTTCCAAATAAAAGGAACTGGAAAAAGTTTCATTCCTAACAAATCCTCTGATAATAAAATTGAGGAGCTCCAGAAACCGAATATTGGGCATCCTCCTGTACCATTATGGAAAAATCGGGTTGCTTTCAATGCAGTTCCCAATAAAAATGAGTACGATTATATGGAGGGTCGTTTTCCAAGAGTTAGTCGCCGACCTAATGATCATAATATGGCATTGTCTTCTTCTTCCAACTCTACTGTCTCTGAAAATGTCAATCCTGGTGGTTCAGGAACATCTACCGACTTGAGTGTATCAATTAGAAGTGCTGAAGTTGGAAGTTCTTCATCTAATATGAACTCACGGCCGACATCTGCAATAATTAAACCTAATATTTTGCCTTTGATTGACGAACAGAACAGAAAGTCCAATGGAGAACATTCTGGAAATACAGACATGGAGGATGAAAAGGTAGATGCTATTGATGGACGTGATAATTTAATCAGATTTGATAGCCGTAGAAAGTTCACATATGATAGATCTGTTGGGACCAATTTGATATTGAAGGATCCGGGAAGTCCCAGCCTGTTGGTCAATCCAAGTTCGAATAGGTTTGAGCAAGTTTATGACGATGTGGATGTAGGTCAATGTGAAATCCAATGGGAGGACCTCATTATTGGTGAAAGGATTGGACTAGGTTCGTATGGAGAAGTCTACCATGCTGATTGGAATGGCACGGAGGTTGCTGTGAAGAAATTCTTAGACCAGGATTTTTCTGGCGCTGCTTTAGCTGAGTTCAAAAGAGAAGTACTGATAATGCGGCAGCTGCGTCATCCGAATATTGTTCTCTTTATGGGTGCTGTCACTCGTCCTCCCAACCTTTCCATTGTTACTGAGTTTCTTCCAAGAGGAAGCTTGTACCGGATCATTCACCGCCCACATTGTCAAATTGATGAAAAGCGCAGAATAAAAATGGCCCTTGATGTGGCAAGGGGCATGAATTGCTTGCATACAAGTACTCCAACAATTGTTCACCGAGATCTGAAATCACCGAATCTTTTGGTTGATAAGAACTGGAATGTGAAGATTCAAAACAATGGATCAAGCTATCCCCCTCATGGTGCTGCCTCTGCCGAACAAACAATGAAACTAGCCAACATGTTTTCTTTGATTGCCCTCTTTCTAGAAGGATATGGATGGAGACTTTTCGGCCTTCAACTGGTATCAGATTTTGGGTTGTCACGCCTGAAGCACAATACGTTTTTATCATCCAAATCAACTGGAGGAACGCCTGAGTGGATGGCACCAGAAGTCCTTCGGAACGAGCCTTCGAATGAGAAGTGCGACGTTTATAGCTTTGGAATAATTCTATGGGAACTTGCTACATTGAGACTGCCTTGGAGTGGGATGAATCCTATGCAAGTTGTTGGTGCAGTAGGTTTCCAGAATCGACGACTCGAAATACCCAAGGAAGTGGATCCCACGGTTGCAAGGATAATCTGGGAATGCTGGCAAACCGATCCGAACTTGCGCCCCTCATTCTCACAATTAGCCAATATTCTGAAGCCACTGCAGCGGCTCGTCCTGCCACCACATTCAGACCAGCCAAGTTCGTCGGTGCTGCAAGAGATTTCTGTAAATTCTACACCTTAG 2976 44.99 MKHIFKKFHIGSNHEPNRTNENPSPVAASSSPCVSDNRPATAPGQTSGNSPSSPSSSPSLATTPPGGGSVTPVSVPPNRSDYFSSEEEFQVQLALAISASNSDFRDDPEKDQIRAATLLSLGNHRIDSTARDQGDAAEVLSRQYWEYNLLDYEEKVVNGFYDVLSTDSAVQGKIPSLSDIEASFGSSGFEVVMVNMTVDPALEELVQIAQCIADCPGTEVRVLVQRLAELVMGHMGGPVKDAHFMLARWMERSTELRTSLHTSVLPIGSINIGLSRHRALLFKVLADSIKMPCRLVKGSHYTGVEEDAVNIVKLEDEREFLVDLMAAPGTLLPADTFSAKDTTNFNPYNPKVSKIPSLRHSNDVGISSAKPTSALEEGSSQNFEAEAISLVDGKLSYGRTESVPSSSGTGTSRCKGAHFGEGNARLNVNVVPFGQSSEDSKNLFADLNPFQIKGTGKSFIPNKSSDNKIEELQKPNIGHPPVPLWKNRVAFNAVPNKNEYDYMEGRFPRVSRRPNDHNMALSSSSNSTVSENVNPGGSGTSTDLSVSIRSAEVGSSSSNMNSRPTSAIIKPNILPLIDEQNRKSNGEHSGNTDMEDEKVDAIDGRDNLIRFDSRRKFTYDRSVGTNLILKDPGSPSLLVNPSSNRFEQVYDDVDVGQCEIQWEDLIIGERIGLGSYGEVYHADWNGTEVAVKKFLDQDFSGAALAEFKREVLIMRQLRHPNIVLFMGAVTRPPNLSIVTEFLPRGSLYRIIHRPHCQIDEKRRIKMALDVARGMNCLHTSTPTIVHRDLKSPNLLVDKNWNVKIQNNGSSYPPHGAASAEQTMKLANMFSLIALFLEGYGWRLFGLQLVSDFGLSRLKHNTFLSSKSTGGTPEWMAPEVLRNEPSNEKCDVYSFGIILWELATLRLPWSGMNPMQVVGAVGFQNRRLEIPKEVDPTVARIIWECWQTDPNLRPSFSQLANILKPLQRLVLPPHSDQPSSSVLQEISVNSTP 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31401704 31415060 + ClCG03G016290.2 Cla03g01564 270064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01564 991 CDD STKc_MAP3K-like 671 962 - -
Cla03g01564 991 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Cla03g01564 991 Pfam Protein tyrosine and serine/threonine kinase 849 961 IPR001245 GO:0004672|GO:0006468
Cla03g01564 991 Pfam Protein tyrosine and serine/threonine kinase 666 808 IPR001245 GO:0004672|GO:0006468
Cla03g01564 991 PANTHER SERINE-THREONINE PROTEIN KINASE 74 414 - -
Cla03g01564 991 MobiDBLite consensus disorder prediction 15 81 - -
Cla03g01564 991 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 849 983 - -
Cla03g01564 991 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 409 810 - -
Cla03g01564 991 MobiDBLite consensus disorder prediction 511 544 - -
Cla03g01564 991 Gene3D Transferase(Phosphotransferase) domain 1 744 969 - -
Cla03g01564 991 Pfam Ethylene-responsive protein kinase Le-CTR1 137 331 - -
Cla03g01564 991 SMART serkin_6 665 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01564 991 MobiDBLite consensus disorder prediction 1 81 - -
Cla03g01564 991 ProSiteProfiles Protein kinase domain profile. 665 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01564 991 PANTHER SERINE-THREONINE PROTEIN KINASE 849 983 - -
Cla03g01564 991 PANTHER SERINE-THREONINE PROTEIN KINASE 409 810 - -
Cla03g01564 991 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Cla03g01564 991 SUPERFAMILY Protein kinase-like (PK-like) 653 976 IPR011009 -
Cla03g01564 991 MobiDBLite consensus disorder prediction 516 544 - -
Cla03g01564 991 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 74 414 - -
Cla03g01564 991 Gene3D Phosphorylase Kinase; domain 1 658 742 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01564 Cla-Chr3:31401704 Cla05g01828 Cla-Chr5:30182438 1.28E-69 dispersed
Cla03g01564 Cla-Chr3:31401704 Cla04g00964 Cla-Chr4:24754951 1.47E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80458 PF14381 EDR1 7.30E-72 CL0125 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01564 - - csv:101218274 1723.37