Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla03g01576 | ATGGCCGGAATCCCCTCTGAGGGGTTGGGGGATGATTTTTTCGAGCAGATTCTGGCGGTGCCGCCGTCTTACGGCGGCGCAGGTGGCGGTGATATGGTGTCTATGCCTATGGGACTACAACTTGGGTCCGGCGGCGGCGGCGGTGGTGGCGGCGGAGGAATGGGTATGCCTTTGGGATTGAATTTAGAACAGGGGTTTTTGAGACAAGAGAGATACAGAGAAGAGCTTGATGGCCACAATAATAATACCACTAATAATGCTTCTTCTTCTTCAACTGCTTCTTCAGGAATCACTGAGAGAGATTCTTCGATGCAGCACATGACAAACTTGTTTCCAACCTTTGGACATTTGCAGACTCAACAACTCCGCCCACCGCCGCCGTTACATCTCCACCAGCCCTTTCACAATCAAACAACTCCCATGACGGTTTCTGCTGTACCACAACCACCTCAAGTTCGACCAAGAGTTCGAGCAAGACGAGGGCAAGCGACCGATCCTCACAGTATTGCAGAAAGGTTGCGTCGAGAAAGAATTGCAGAAAGAATGAAGGCCTTGCAGGAGTTAGTTCCTAGTTGCAATAAGACTGATCGAGCGGCAATGCTCGATGAAATTGTTGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGTAGACTAGGTGGGGCAGGTGCGGTGGCTCAACTTGTGGCCGATGTGCCCCTATCGTCAGTCGAGGGAGAAGGCATTGAGAGTGGCAACAATCAGCATGCATGGGAAAAGTGGTCAAGTGATGGAACAGAGCAACAAGTAGCCAAATTGATGGAAGAAGATGTGGGAGCTGCCATGCAATTCCTACAATCTAAAGCTCTATGCATTATGCCTATCTCATTAGCCTCAGCAATTTTCAGGACACACCAAGCAGATCCACAAATCTTAGTCAAGCCAGAAATGAACACTCCCTAG | 954 | 48.74 | MAGIPSEGLGDDFFEQILAVPPSYGGAGGGDMVSMPMGLQLGSGGGGGGGGGGMGMPLGLNLEQGFLRQERYREELDGHNNNTTNNASSSSTASSGITERDSSMQHMTNLFPTFGHLQTQQLRPPPPLHLHQPFHNQTTPMTVSAVPQPPQVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGNNQHAWEKWSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQADPQILVKPEMNTP | 317 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 31538515 | 31546181 | - | ClCG03G016390.1 | Cla03g01576 | 270076 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla03g01576 | 317 | MobiDBLite | consensus disorder prediction | 141 | 166 | - | - | |
| Cla03g01576 | 317 | Pfam | Helix-loop-helix DNA-binding domain | 167 | 211 | IPR011598 | GO:0046983 | |
| Cla03g01576 | 317 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 7 | 306 | - | - | |
| Cla03g01576 | 317 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 162 | 211 | IPR011598 | GO:0046983 | |
| Cla03g01576 | 317 | MobiDBLite | consensus disorder prediction | 79 | 99 | - | - | |
| Cla03g01576 | 317 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 160 | 221 | IPR036638 | GO:0046983 | |
| Cla03g01576 | 317 | PANTHER | DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED | 7 | 306 | - | - | |
| Cla03g01576 | 317 | SMART | finulus | 168 | 217 | IPR011598 | GO:0046983 | |
| Cla03g01576 | 317 | MobiDBLite | consensus disorder prediction | 77 | 99 | - | - | |
| Cla03g01576 | 317 | Gene3D | - | 155 | 212 | IPR036638 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g01677 | Cla-Chr2:31633744 | Cla03g01576 | Cla-Chr3:31538515 | 9.01E-42 | dispersed | |
| Cla03g01576 | Cla-Chr3:31538515 | Cla09g00695 | Cla-Chr9:6741355 | 8.95E-96 | dispersed | |
| Cla07g00021 | Cla-Chr7:250832 | Cla03g01576 | Cla-Chr3:31538515 | 1.24E-20 | dispersed | |
| Cla10g01649 | Cla-Chr10:32151425 | Cla03g01576 | Cla-Chr3:31538515 | 3.37E-17 | dispersed | |
| Cla03g01576 | Cla-Chr3:31538515 | Cla06g01221 | Cla-Chr6:25394004 | 3.17E-64 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60859 | PF00010 | HLH | 7.00E-08 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla03g01576 | - | - | csv:101216855 | 506.138 |