Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01582 ATGGGGTGTCTGGTTAGCCGAGAGGCGTCTTCTAGAGGTGTAGAAGCCCCTGTAGATAAGGGGAAGAGGAATCAAATTACTGAGTCTCGTGTTCAAGGCGAGAGTGTTCAGGAGAAAGAAGTAGAACGTGTGAGTGCTAATGTAGAGGAGCATGTAAACGTGAACAAGGAAGAGGAGCAGAAGGCTGATGGGGTTCAGGAGCGCCCACGAGCAGAACGGAGAAAGTCGAGGAAGGTTCCGAGGCCAACTAACTTGCCAAACCATTCCCAGGGAGAGCAAGTTGCTGCTGGATGGCCTTCTTGGCTCACGGCAGTTTGTGGAGAGGCTCTCAATGGTTGGATTCCTCGGAAGGCTGATACATTTGAAAAGATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTATAAAGCTAAAGATATACTTACAGGTAAAATTGTTGCACTGAAGAAGGTTCGGTTTGACAATTTGGAACCTGAAAGTGTGAAATTTATGGCTAGAGAGATTCTTATCCTTAGGAGATTAAATCATAACAATGTTGTGAAATTGGAGGGCTTGGTTACATCACGGATGTCTTGTAGTTTATACTTGGTGTTTGAGTACATGGAACATGATTTAGCAGGTCTTGCTGCAAATCCATCGATCAAATTTACGGAATCTCAGGTTAAATGTTTCATGCAACAACTGCTATCTGGACTGGAACACTGTCATAATCGACGGGTGCTTCACCGTGACATTAAAGGATCTAATCTTCTCATTGATAGTGGGGGAGTGCTTAAAATTGCCGACTTTGGATTGGCTTCTTTCTTTGATCCGAATCACAAGCACCCTATGACTAGTCGGGTGGTTACCTTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCAACTGATTATGGAGTAGGTGTAGACCTCTGGAGTGCTGGGTGTATACTGGCTGAGTTATTAGCTGGGAGGCCTATTATGCCTGGCCGTACAGAGGTGGAGCAACTACACAAGATATACAAGCTTTGTGGCTCCCCTTCAGATGAATATTGGAAAAGGGCAAAACTTCCAAATGCAACTTTATTTAAGCCCAGAGAACCTTATAAAAGATGTATAAAGGAGACATTTAAAGATTTCCCCCCATCTTCTCTGCCCCTTATAGAAACGCTTCTTGCAATTGATCCAGCAGAACGAAAGACAGCAACAGATGCATTAAATAGCGAGGGAAATTATAACCATTTGGATGTAACAGATTTTACATTCTCACTTTCTGTGACTGCTATAATGGAAATTATGCCATATTTCTTGGATGCCTTTCAAACTTTGTCCATTGCAATACAGTTCTTCATGACAGAACCTTTAGCCTGCAAACCCTCCAACCTCCCGAAATATCCTCCCAGTAAGGAGATGGATGCTAGAAGACGGGATGATGAAGCTCGGAGACTAAGAGCAGCTAGTAAAGCCCAGGGAGATGGAGCGAAGAAAACACGCACACGTGTTAGGGCTATTCCAGCTCCCGAAGCCAATGCCGAAATACAAACAAATATTGACAGGAGGCGCTTAATTACACATGCAAATGCAAAGAGCAAAAGTGAAAAGTTTCCCCCACCACATCAGGATGGAGCGCTTGGCTTTACGCTAGGATATTCACGTCATATCGACCCATCTGGTGTTCCTCCCGACATACCGTTCAGCTCGACGCTGTTCACTTATTCTAAGGAACCAGTCCAAGCCTGGTCTGGTCCACTAGTCCCTGGTGCTGGCACTGAGGCTCCTAGGCAGAAGAAGCATGTAGGAGGTGTATCATCAAATTCTTCCCACGGTTCATCCAAATTGGTAATCAATCAGCCTGGCCTACTCTCAGCTGAGGAGATCATGAATTGA 1869 44.73 MGCLVSREASSRGVEAPVDKGKRNQITESRVQGESVQEKEVERVSANVEEHVNVNKEEEQKADGVQERPRAERRKSRKVPRPTNLPNHSQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKIVALKKVRFDNLEPESVKFMAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFMQQLLSGLEHCHNRRVLHRDIKGSNLLIDSGGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRAKLPNATLFKPREPYKRCIKETFKDFPPSSLPLIETLLAIDPAERKTATDALNSEGNYNHLDVTDFTFSLSVTAIMEIMPYFLDAFQTLSIAIQFFMTEPLACKPSNLPKYPPSKEMDARRRDDEARRLRAASKAQGDGAKKTRTRVRAIPAPEANAEIQTNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPSGVPPDIPFSSTLFTYSKEPVQAWSGPLVPGAGTEAPRQKKHVGGVSSNSSHGSSKLVINQPGLLSAEEIMN 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31590266 31604123 + ClCG03G016450.1 Cla03g01582 270082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01582 622 Pfam Protein kinase domain 121 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01582 622 MobiDBLite consensus disorder prediction 462 493 - -
Cla03g01582 622 MobiDBLite consensus disorder prediction 593 607 - -
Cla03g01582 622 SUPERFAMILY Protein kinase-like (PK-like) 115 402 IPR011009 -
Cla03g01582 622 Gene3D Transferase(Phosphotransferase) domain 1 204 411 - -
Cla03g01582 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Cla03g01582 622 PANTHER OS01G0367700 PROTEIN 49 403 - -
Cla03g01582 622 SMART serkin_6 121 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01582 622 ProSiteProfiles Protein kinase domain profile. 121 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01582 622 Gene3D Phosphorylase Kinase; domain 1 108 203 - -
Cla03g01582 622 PANTHER CELL DIVISION PROTEIN KINASE 436 594 - -
Cla03g01582 622 PANTHER CELL DIVISION PROTEIN KINASE 49 403 - -
Cla03g01582 622 PANTHER OS01G0367700 PROTEIN 436 594 - -
Cla03g01582 622 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Cla03g01582 622 MobiDBLite consensus disorder prediction 13 73 - -
Cla03g01582 622 MobiDBLite consensus disorder prediction 1 93 - -
Cla03g01582 622 CDD STKc_CDK9_like 121 403 - -
Cla03g01582 622 MobiDBLite consensus disorder prediction 579 607 - -
Cla03g01582 622 Coils Coil 41 68 - -
Cla03g01582 622 MobiDBLite consensus disorder prediction 455 493 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g01601 Cla03g01582 CCT
Cla02g01601 Cla03g01582 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01554 Cla-Chr1:30173845 Cla03g01582 Cla-Chr3:31590266 7.24E-142 transposed
Cla02g01732 Cla-Chr2:32202471 Cla03g01582 Cla-Chr3:31590266 1.24E-163 transposed
Cla02g02341 Cla-Chr2:38493991 Cla03g01582 Cla-Chr3:31590266 1.39E-103 transposed
Cla03g00375 Cla-Chr3:4339570 Cla03g01582 Cla-Chr3:31590266 0 transposed
Cla04g01180 Cla-Chr4:26985318 Cla03g01582 Cla-Chr3:31590266 2.97E-174 transposed
Cla05g00613 Cla-Chr5:5686445 Cla03g01582 Cla-Chr3:31590266 0 transposed
Cla05g01008 Cla-Chr5:10158398 Cla03g01582 Cla-Chr3:31590266 0 transposed
Cla08g00068 Cla-Chr8:1510168 Cla03g01582 Cla-Chr3:31590266 5.31E-175 transposed
Cla08g00325 Cla-Chr8:7581863 Cla03g01582 Cla-Chr3:31590266 8.20E-141 transposed
Cla10g01343 Cla-Chr10:28417520 Cla03g01582 Cla-Chr3:31590266 2.69E-13 transposed
Cla11g00055 Cla-Chr11:721799 Cla03g01582 Cla-Chr3:31590266 0 transposed
Cla11g00429 Cla-Chr11:4948841 Cla03g01582 Cla-Chr3:31590266 3.13E-162 transposed
Cla02g01601 Cla-Chr2:30730677 Cla03g01582 Cla-Chr3:31590266 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80459 PF00069 Pkinase 6.60E-67 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01582 K08819 - csv:101215893 1072.0