Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla03g01614 | ATGGATGTTACCAACAATTCAAGAGCACCATCACCACCACGAAAAAATCACTTCCATAACCGCAACAATTCCAAATTCCACCAACATTACCACAACCACAATGCCATTCTCAGCTCAAATTCCTTCCTCATTATCATTGCCTCAATCATCTCCATCACCATTCTCCTTGCCATCTTCTTCCTCATCTTCATGCTTCTCCGCCTCAAATCCGCTCGAAACACTGCCACTGCCGCCGCCTCCACCGCCGCACAATCCACCACATTCATCCCTCACACAACCATCAATTTTGACTCAAGCCCAGAAGTGAAGGGGGGTGGGTGCTTATATGGAGGCAATTCTGGGAGAATTCCTCAGTATAGAATCAGGGGAGTTCAAGTTTTCACTTATAAGGAACTGGAATTGGCTACTGACAATTTTAATGAAGCAAATGTGATTGGAAATGGAAGATTAGGGTTTGTGTACAGAGGAGTTCTTGCAGATGGAGCTGTGGTTGCCATTAAAATGCTTCACAGAGATGGCAAGCAGAGGGAACGTGCTTTCAGAATGGAGGTAGATCTCCTAAGCCGCTTGCACTCTCCTTGTTTGGTGGAATTGCTTGGCTACTGCGCTGACCAACACCATAGGCTTCTGATATTTGAATTTATGCACAATGGTACTCTTCATCATCATCTACATAATCCCAACAGTGAATCTCGGCCATTGGATTGGAAAACTAGAATGAGGATAGCCCTTGATTGTGCCAAGGCACTTGAGTTCCTCCATGAGCATGCAGTTCCATCTGTTATTCATAGAAACTTCAAGTGCACCAATGTTCTACTGGATCAGGATTTCCGAGCCAAGGTGTCGGATTTTGGTTCGGCCAAGATGGGCTCTGACAAGATCAATGGTCAGATATCTACACAAGTCCTGGGAACCACAGGATATCTAGCACCAGAGTATGCTTCAACAGGAAAACTTACAACAAAGTCAGATGTGTACAGCTATGGTGTTGTGCTGCTTGAGCTATTGACCGGTCGAGTGCCAGTTGATATCAAACGGCCGCAGGGCGAGCATGTTCTTGTCTCATGGGCTCTCCCAAGGCTGACTAATAGAGAAAAAGTAGAGAAAATGATTGACCCAGCTATTCAAGGGAAGTACTCAAAAAAGGATCTAATTCAGGTAGCAGCCATTGCAGCCATGTGTGTGCAGCCTGAAGCCGACTACCGGCCTTTGATGACCGACGTTGTGCAGTCACTGGTTCCTCTAGTTAAGAACCCATCATCGTCGTCTCGATTCTTCAATTGA | 1284 | 45.79 | MDVTNNSRAPSPPRKNHFHNRNNSKFHQHYHNHNAILSSNSFLIIIASIISITILLAIFFLIFMLLRLKSARNTATAAASTAAQSTTFIPHTTINFDSSPEVKGGGCLYGGNSGRIPQYRIRGVQVFTYKELELATDNFNEANVIGNGRLGFVYRGVLADGAVVAIKMLHRDGKQRERAFRMEVDLLSRLHSPCLVELLGYCADQHHRLLIFEFMHNGTLHHHLHNPNSESRPLDWKTRMRIALDCAKALEFLHEHAVPSVIHRNFKCTNVLLDQDFRAKVSDFGSAKMGSDKINGQISTQVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLELLTGRVPVDIKRPQGEHVLVSWALPRLTNREKVEKMIDPAIQGKYSKKDLIQVAAIAAMCVQPEADYRPLMTDVVQSLVPLVKNPSSSSRFFN | 427 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 32011279 | 32014606 | - | ClCG03G016820.1 | Cla03g01614 | 270114 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla03g01614 | 427 | ProSiteProfiles | Protein kinase domain profile. | 139 | 416 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cla03g01614 | 427 | Gene3D | Transferase(Phosphotransferase) domain 1 | 215 | 424 | - | - | |
| Cla03g01614 | 427 | CDD | STKc_IRAK | 145 | 415 | - | - | |
| Cla03g01614 | 427 | PANTHER | OS01G0750732 PROTEIN | 11 | 423 | - | - | |
| Cla03g01614 | 427 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Cla03g01614 | 427 | PANTHER | SERINE/THREONINE-PROTEIN KINASE CDL1-LIKE | 11 | 423 | - | - | |
| Cla03g01614 | 427 | Gene3D | Phosphorylase Kinase; domain 1 | 112 | 214 | - | - | |
| Cla03g01614 | 427 | SUPERFAMILY | Protein kinase-like (PK-like) | 117 | 412 | IPR011009 | - | |
| Cla03g01614 | 427 | Pfam | Protein tyrosine and serine/threonine kinase | 143 | 412 | IPR001245 | GO:0004672|GO:0006468 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla03g01614 | Cla-Chr3:32011279 | Cla07g00141 | Cla-Chr7:1588057 | 6.64E-99 | dispersed | |
| Cla08g01355 | Cla-Chr8:26371507 | Cla03g01614 | Cla-Chr3:32011279 | 3.47E-93 | dispersed | |
| Cla09g00287 | Cla-Chr9:2784817 | Cla03g01614 | Cla-Chr3:32011279 | 1.33E-92 | dispersed | |
| Cla04g00879 | Cla-Chr4:23792397 | Cla03g01614 | Cla-Chr3:32011279 | 1.48E-53 | transposed | |
| Cla07g00254 | Cla-Chr7:2802426 | Cla03g01614 | Cla-Chr3:32011279 | 2.11E-146 | transposed | |
| Cla03g01614 | Cla-Chr3:32011279 | Cla05g00626 | Cla-Chr5:5770602 | 1.41E-99 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 80462 | PF07714 | PK_Tyr_Ser-Thr | 6.20E-44 | CL0016 | Cla | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla03g01614 | - | - | csv:101210578 | 746.503 |