Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01621 ATGTGGACTTCTGTGGTTGCAGCTTTGAGAATTTTCTGTAATGGCTTGAAATTTGTCAGTAGATCTGTTGGAGATTTACTTCAAAGTTCAACTGTGATGGATCAGCAAGGGCATGGCCAGCCTCCATCCATGGGAGCAGTTGGCAGTGGAGGTCAGATAGCATATGGTAGCAACCTGTACCATCCCAACCAAATGACTGTAGGCCCGACTTCCGGATCTGTCGTTACATCAGTCGGAGGTATTCAGTCTACAAGTCAACCTGGTGGAGCTCAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAGCAGCTTCAGCAGCAGCTCCAGACTTTTTGGGTAAATCAATACCAAGAGATTGAGAAGGTAACAGACTTCAAGAACCATAGTCTTCCGTTAGCAAGAATCAAGAAGATCATGAAGGCTGACGAGGACGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCATACTGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATAGTGCCGAGGGAGGATCTGAAAGACGAAGTACTCACATCGATTCCAAGAGGATCAATGACAGTTGGGGGGCCTGGAGATGCACTTCCTTACTGCTATATGCCGTCTCAGCATGCACCTCAAGTTGGGGCACCTGGAATGATCATGGGTAAGCCTGTGATGGACCCAGCTATGTATGCTCCACAATCACACCCTTACATGCCTCCACAAATGTGGCAGCACGCACAAGATCAAACCCCTCCTGATCAATAG 879 46.42 MWTSVVAALRIFCNGLKFVSRSVGDLLQSSTVMDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMTVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSMTVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSHPYMPPQMWQHAQDQTPPDQ 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32096760 32100100 + ClCG03G016880.1 Cla03g01621 270121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01621 292 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 33 290 - -
Cla03g01621 292 SUPERFAMILY Histone-fold 101 207 IPR009072 GO:0046982
Cla03g01621 292 MobiDBLite consensus disorder prediction 269 292 - -
Cla03g01621 292 Gene3D Histone, subunit A 97 213 IPR009072 GO:0046982
Cla03g01621 292 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 33 290 - -
Cla03g01621 292 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 135 198 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01621 Cla-Chr3:32096760 Cla09g01320 Cla-Chr9:20823609 9.75E-79 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60863 PF00808 CBFD_NFYB_HMF 3.50E-18 CL0012 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01621 K08066 - csv:101209664 454.136