Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01621 ATGTGGACTTCTGTGGTTGCAGCTTTGAGAATTTTCTGTAATGGCTTGAAATTTGTCAGTAGATCTGTTGGAGATTTACTTCAAAGTTCAACTGTGATGGATCAGCAAGGGCATGGCCAGCCTCCATCCATGGGAGCAGTTGGCAGTGGAGGTCAGATAGCATATGGTAGCAACCTGTACCATCCCAACCAAATGACTGTAGGCCCGACTTCCGGATCTGTCGTTACATCAGTCGGAGGTATTCAGTCTACAAGTCAACCTGGTGGAGCTCAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAGCAGCTTCAGCAGCAGCTCCAGACTTTTTGGGTAAATCAATACCAAGAGATTGAGAAGGTAACAGACTTCAAGAACCATAGTCTTCCGTTAGCAAGAATCAAGAAGATCATGAAGGCTGACGAGGACGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCATACTGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATAGTGCCGAGGGAGGATCTGAAAGACGAAGTACTCACATCGATTCCAAGAGGATCAATGACAGTTGGGGGGCCTGGAGATGCACTTCCTTACTGCTATATGCCGTCTCAGCATGCACCTCAAGTTGGGGCACCTGGAATGATCATGGGTAAGCCTGTGATGGACCCAGCTATGTATGCTCCACAATCACACCCTTACATGCCTCCACAAATGTGGCAGCACGCACAAGATCAAACCCCTCCTGATCAATAG 879 46.42 MWTSVVAALRIFCNGLKFVSRSVGDLLQSSTVMDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMTVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSMTVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSHPYMPPQMWQHAQDQTPPDQ 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32096760 32100100 + ClCG03G016880.1 Cla03g01621 270121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01621 292 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 33 290 - -
Cla03g01621 292 SUPERFAMILY Histone-fold 101 207 IPR009072 GO:0046982
Cla03g01621 292 MobiDBLite consensus disorder prediction 269 292 - -
Cla03g01621 292 Gene3D Histone, subunit A 97 213 IPR009072 GO:0046982
Cla03g01621 292 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 33 290 - -
Cla03g01621 292 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 135 198 IPR003958 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01621 K08066 NFYC, HAP5; nuclear transcription factor Y, gamma - csv:101209664 454.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01621 Cla-Chr3:32096760 Cla09g01320 Cla-Chr9:20823609 9.75E-79 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla06g01745 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 9.3e-89 323.6
Cla09g01320 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.4 2.2e-53 206.1
Cla03g01621 . 114 282 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.4e-52 203.4
Cla03g01621 . 33 292 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 2.3e-55 212.6
Cla09g01320 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.2e-48 190.3
Cla06g01745 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 7.7e-43 171.0
Cla03g01621 . 55 282 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.0 2.4e-62 235.7
Cla09g01320 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.9e-52 202.2
Cla06g01745 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.9e-51 199.5
Cla06g01745 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.8e-38 155.2
Cla06g01745 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 7.7e-81 297.4
Cla09g01320 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.0e-49 193.0
Cla03g01621 . 114 282 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 5.9e-49 191.4
Cla09g01320 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 2.8e-65 245.4
Cla03g01621 . 86 250 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 3.3e-50 195.3
Cla06g01745 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.3e-50 194.9
Cla08g01010 . 35 169 CCAAT-HAP5 Transcription Factor Family AT5G43250 65.5 9.3e-38 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60863 PF00808 CBFD_NFYB_HMF 3.50E-18 CL0012 Cla TF