Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01633 ATGGCTTCACTTCTTGCCCTTCATCCCACTGCATCTCTTCCCAACTCCCCAAAATTTCACCCATCGCCCATCTTCCACGCCCTCAATTCATGCTCATCAATGGCTGAGCTCAAGCAATTTCAGTCCCAAATCATTCGTTTTGGTCTCTCTACTGACAATGATGCCATCGGCCGTCTCATCAAATTTTGTGCTGTTTCCAAGTATGGAGATCTTCACTATGCTCTTCTTTTATTCAACTCAATACCTTACCCAGATGCTTTCATTTACAATACTTTAATTAGAGCTTACTTACAGTTCCAATCCCCTAAATCTTCCTTACTTTTGTATTTGCAAATGCTTCATAACTCTGTCTTTCCCAATAAATTCACATTCCCTTCTTTAATTCGTGCTTGCTGTATTGATAATGCTGTCAAAGAAGGGAAACAAATTCATGCCCATGTTGTTAAATTTGGTTTCACAACTGATAGATTTTCGAACAACAATTTAATTCATATGTATGCTAATTTTCAATCCTTGGAAGAAGCTAGAAGGGTGTTTGATTCTATTGAGTTACCTGATCTTGTAGCTTGGACTACTTTGGTTACTGGGTATTCTCAATTGGGATTTGTAGATGAAGCTTTACGAGTTTTCGAGTCGATGCCTGAACATAACTCTGTTTCTTGGAATGCTATGATTTCTTGTTTTGTTCAAAACAATAGATTTCATGAGGCATTTGGTTTGTTTAATAGGATGAGATTAGAGAAGGTTGTTTTGGACAAATATGTGGCTGCTAGTATGTTATCAGCTTGTACAGGATTAGGAGCACTCGAACAAGGGAAATGGATACATAGATACATTAAGAAAAATGGGATTGAATTGGATTCAAAACTTGCAACTACTTTGATTGATATGTATTGTAAATGTGGTTGTTTGGACTGTGCTTTTCAAGTGTTTACTCATTTACCTGAAAAGGGGATTTCTTCATGGAATTGTATGATTGGAGGGATGGCTATGCATGGGAAAGGAGCGGCAGCTATTGAACTTTTTAAAGAGATGGAAACCAAAATGGTGAAACCAGACAACATAACTTTCCTTAATGTACTAAGTGCTTGTGCTCACTCTGGGTTAGTCGAAAATGGTCAATACTATTTCTGTCGCTTTACTCAAGTTTACGGTATTGAACCCGGAACCGAGCATTATGGATGCATGGTTGATTTGTACGGACGAGCTGGGATGTTGGAGGAAGCAATGAAGGTCATAGATGAGATGCCCATGAGTCCTGATGTAGGTGCGTTAGGTGCCTTTGTTGGAGCTTGTAAAATTCATGGGAACATAGAGTTGGGAGAGGAAATAGGGAAGAGAGTAATAGAATTAGAGCCTACGAATAGTGGGCGTTACGTTCTACTGGGAAATCTATACGCCGAGGCAGGTAGATGGGAAAGTGTTGCAGAAGTAAGAAAGTTAATGAATGATAGAGAAGTGAAGAAGGCTGCTGGAGTTTCCATGATTGAATTGGAAGGTGTTGTGTATGAATTTATTGCAGGAGGAAGAGTTCATCCTGAAGCAAAGGAAATTTATGATAAACTTAATGAGATGTTAGAATGTATAAGAATTGAAGGATATGTAGCAGAGAATGAAACTGAAGAGGAAAAGGATAATCCTGTTTATTACCATAGTGAGAAACTGGCAATTGCTTTTGGGTTGCTCAAAACTAAAGCAGGGGAAATGCTTAGAATTACTAAGAATCTGAGGGTTTGGGGTTCTGATGATGGTGGGAGCTTTGTGTCTGATGGTACCCATGGAAGCTCTGAATCCCATCAACACCCTCAGCTTAAAGTTCCCAAGAAGAAAAGAAACTTGCCAGGAACACCAGATCCAGATGCGGATGTTGTATCGTTATCTCCAAAAACTCTTATGGCAACCAATCGATTCGTGTGTGAAATATGCAACAAAGGATTTCAAAGAGACCAAAACTTGCAACTGCACAGACGAGGTCACAACCTACCATGGAAGTTGAAGCAAAGGACAAGCGGGAGCGAGACAAAGAGGAGGGTGTATGTGTGCCCAGAACCGTCATGCGTGCACCACGACCCGGCGAGGGCGCTCGGAGACCTCACCGGAATCAAGAAGCATTTCAGTAGAAAGCATGGGGAGAAAAAGTGGAAATGTGAGAAATGCTCCAAAAGATATGCTGTTCAATCTGACTTGAAAGCTCATTCCAAAACCTGTGGCTCCAAGGAATACAAATGTGACTGTGGCACAATCTTTTCCAGAAGAGATAGCTTTATCACCCACAGAGCATTTTGTGATGCCTTGACAGAAGAAAACAACAAATTAGTATCTCATCAAGTAGCAACAACAATGGCTTCCACCGCCATTAATGCGCCTTCCTTTCAACCTCAACCACTTCAACATCTTCTTTCTCAAACCCCCGTCCTTTCGCCGCCATTAACGCTGCCCCACGACCTTATGCCTATTCCTCCAAAACCCTTAAATCTATCGGCTGGTCCCATGTTTTCATCTTCCATTTCTTCCGCCACCGATGGCCACCACTTTCCCTCCCCCTCTGCCCTCATGTCCGCCACCGCTCTGCTGCAGAAGGCGGCACAGATGGGAGCTGCCGTAAGTAGCCGTGGAAACTCCACTCCTTGTTTGAGTTCGCCCATGGTCCATGAGAAGAAGGGTTTTGTTACAACCATGGCTCCTTCTTCTTTCTGTGGGATATTGGGTACCAACTGTTTGCAAAAATGTCAAGAAGAAAACATTTTGTCTCAACTACCTTCCAAGGGCAAAGCTGTGGACATGGAGATGATCGACAACATTCCGATGCTGAATGGAGTGCTCGATGATCAGCCGGTCGTGGAGGCGGCGAGGAAGACGATGACATTAGATTTGTTGGGGGCTGAGGGAGGAAAAGGGATGAAATTTCAAGCACAAGAAAATGTGGGGTTTGGAGGACTTGTGGAGAATATGACTTATTTTAGAAACCAAGGAGCCATGGGAAGGCAGATTTGGGAGATTTGA 3003 42.42 MASLLALHPTASLPNSPKFHPSPIFHALNSCSSMAELKQFQSQIIRFGLSTDNDAIGRLIKFCAVSKYGDLHYALLLFNSIPYPDAFIYNTLIRAYLQFQSPKSSLLLYLQMLHNSVFPNKFTFPSLIRACCIDNAVKEGKQIHAHVVKFGFTTDRFSNNNLIHMYANFQSLEEARRVFDSIELPDLVAWTTLVTGYSQLGFVDEALRVFESMPEHNSVSWNAMISCFVQNNRFHEAFGLFNRMRLEKVVLDKYVAASMLSACTGLGALEQGKWIHRYIKKNGIELDSKLATTLIDMYCKCGCLDCAFQVFTHLPEKGISSWNCMIGGMAMHGKGAAAIELFKEMETKMVKPDNITFLNVLSACAHSGLVENGQYYFCRFTQVYGIEPGTEHYGCMVDLYGRAGMLEEAMKVIDEMPMSPDVGALGAFVGACKIHGNIELGEEIGKRVIELEPTNSGRYVLLGNLYAEAGRWESVAEVRKLMNDREVKKAAGVSMIELEGVVYEFIAGGRVHPEAKEIYDKLNEMLECIRIEGYVAENETEEEKDNPVYYHSEKLAIAFGLLKTKAGEMLRITKNLRVWGSDDGGSFVSDGTHGSSESHQHPQLKVPKKKRNLPGTPDPDADVVSLSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSGSETKRRVYVCPEPSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDLKAHSKTCGSKEYKCDCGTIFSRRDSFITHRAFCDALTEENNKLVSHQVATTMASTAINAPSFQPQPLQHLLSQTPVLSPPLTLPHDLMPIPPKPLNLSAGPMFSSSISSATDGHHFPSPSALMSATALLQKAAQMGAAVSSRGNSTPCLSSPMVHEKKGFVTTMAPSSFCGILGTNCLQKCQEENILSQLPSKGKAVDMEMIDNIPMLNGVLDDQPVVEAARKTMTLDLLGAEGGKGMKFQAQENVGFGGLVENMTYFRNQGAMGRQIWEI 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32212774 32227380 + ClCG03G017020.2 Cla03g01633 270133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01633 1000 Gene3D Tetratricopeptide repeat domain 280 380 IPR011990 GO:0005515
Cla03g01633 1000 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 419 IPR002885 -
Cla03g01633 1000 Pfam DYW family of nucleic acid deaminases 534 580 IPR032867 GO:0008270
Cla03g01633 1000 Pfam PPR repeat 392 417 IPR002885 -
Cla03g01633 1000 SUPERFAMILY TPR-like 197 472 IPR011990 GO:0005515
Cla03g01633 1000 Gene3D Classic Zinc Finger 615 683 - -
Cla03g01633 1000 ProSiteProfiles Zinc finger C2H2 type domain profile. 714 742 IPR013087 -
Cla03g01633 1000 ProSiteProfiles Zinc finger C2H2 type domain profile. 637 659 IPR013087 -
Cla03g01633 1000 Pfam PPR repeat family 217 263 IPR002885 -
Cla03g01633 1000 Pfam PPR repeat family 84 132 IPR002885 -
Cla03g01633 1000 Pfam PPR repeat family 318 365 IPR002885 -
Cla03g01633 1000 Gene3D Tetratricopeptide repeat domain 27 171 IPR011990 GO:0005515
Cla03g01633 1000 Pfam E motif 435 497 IPR046848 -
Cla03g01633 1000 PANTHER OS06G0231400 PROTEIN 26 593 - -
Cla03g01633 1000 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Cla03g01633 1000 Pfam E+ motif 502 525 IPR046849 -
Cla03g01633 1000 Pfam Zinc finger, C2H2 type 637 659 IPR013087 -
Cla03g01633 1000 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 85 119 IPR002885 -
Cla03g01633 1000 TIGRFAM PPR: pentatricopeptide repeat domain 188 217 IPR002885 -
Cla03g01633 1000 TIGRFAM PPR: pentatricopeptide repeat domain 292 320 IPR002885 -
Cla03g01633 1000 TIGRFAM PPR: pentatricopeptide repeat domain 321 353 IPR002885 -
Cla03g01633 1000 TIGRFAM PPR: pentatricopeptide repeat domain 393 416 IPR002885 -
Cla03g01633 1000 TIGRFAM PPR: pentatricopeptide repeat domain 219 252 IPR002885 -
Cla03g01633 1000 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Cla03g01633 1000 SMART c2h2final6 679 709 IPR013087 -
Cla03g01633 1000 SMART c2h2final6 637 659 IPR013087 -
Cla03g01633 1000 SMART c2h2final6 714 734 IPR013087 -
Cla03g01633 1000 SUPERFAMILY beta-beta-alpha zinc fingers 636 734 IPR036236 -
Cla03g01633 1000 Gene3D Classic Zinc Finger 693 773 - -
Cla03g01633 1000 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 26 593 - -
Cla03g01633 1000 MobiDBLite consensus disorder prediction 587 623 - -
Cla03g01633 1000 ProSitePatterns Zinc finger C2H2 type domain signature. 639 659 IPR013087 -
Cla03g01633 1000 Gene3D Tetratricopeptide repeat domain 172 279 IPR011990 GO:0005515
Cla03g01633 1000 Gene3D Tetratricopeptide repeat domain 381 535 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00404 Cla-Chr1:4449426 Cla03g01633 Cla-Chr3:32212774 2.84E-101 dispersed
Cla02g00201 Cla-Chr2:2122775 Cla03g01633 Cla-Chr3:32212774 1.41E-15 dispersed
Cla03g00868 Cla-Chr3:11932852 Cla03g01633 Cla-Chr3:32212774 2.41E-120 dispersed
Cla03g01633 Cla-Chr3:32212774 Cla03g01695 Cla-Chr3:32861915 2.27E-155 dispersed
Cla05g01330 Cla-Chr5:17152634 Cla03g01633 Cla-Chr3:32212774 4.18E-100 dispersed
Cla09g00573 Cla-Chr9:5334178 Cla03g01633 Cla-Chr3:32212774 2.33E-111 dispersed
Cla09g02159 Cla-Chr9:39235981 Cla03g01633 Cla-Chr3:32212774 3.82E-112 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60865 PF14432 DYW_deaminase 1.10E-13 CL0109 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01633 - - mcha:111009921 973.0