Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01644 ATGGATCGAACCCATTTCTCAATTTTTCCATTTCTCTGTTCTTTTCGCTTTTTCTTTCTTCAAATTCCCCAAATGCCTTCACCATTTCTCGTCTTACCCGACGAGATCCTCATCCGGGTCCGCCAAAATCTCACCCACCACTCCGATTCCAACTCCTGGCGACTTGTTTGCAAGGATTTCCACCGCATCGATCTAATCTCCCGTAAATCTCTTCGTGTCCGTCGAATTGAGTTTCTCTTGAGCTTAATCGCTAAATTTGAAAACATAGATGAATTGGATCTCTCGATTTGCTCACGTATCAGCGACGGGACGGTGTCCATCTTTATGGGTTTTGCGTCTTCAAGGCTGAGGAGCTTGATTCTGACGCGATCGGCGGGGTTGAGCTACTTGGGGTTGGAGAGAATGATGAGGGCTTGCACTGGGTTGCAAATGGTCGACATGTCGTACAGTTGGAGATTTGGGGATAGGGAAGCGGCGGCAGTGTCGAATTGTGAGGGGTTGAAGGAGGTGAGATTGGATAAGTGTTTGGGGGTTACAGATGTTGGTTTGGCGAGGATTGTTGTTGGGTGTGAGAGGTTGGAGAAGCTAAGCTTGAAGTGGTGTTTGCAGGTTACTGATCTTGGTGTTGAGCTTTTGTGTAAGAAGTGCTTCCATTTGAAGCTTCTTGATCTCTCTTATCTCAAGGTGACAAATGAATCACTACGTTCAATATCTTCTTTGCCAAAGCTTGAGATTTTGGTTATGGTGGGCTGTCTTTCAGTTGACGATGTTGGTTTGCAGTATCTTGAGCATGGCTGCCCTTCTCTAAAGGAACTTGATATTTCAAGATGTGGTGGCATTAGTTTGTATGGCTTAACATCCATTTTAAGAGGTCATGATGGTCTTGCGCAGCTTGATGCAGGCTACTGCTTCTCTGAGCTTTCCGCAGACTCTATTTACAGGCTGAAGAACCTGAAATGTCTAAAAGCAATTAGGCTTGATGGTACTCAACTCTCAAGCACGTTCTTCAATGCGATCAGCATCCACTGCGAGTATTTGGTGGAACTTGGGTTTAGCAAATGCAAGGGAGTGACTGATGCAAACATCATTCAGCTGATCTCTCGCTGTAGTAGCTTGAAAGTTCTCAATTTAACATGTTGCCACTCCATCACCGATGTGGCAATATCTAAAATGGCAAGCTCTTGCCAGAAACTTATGTCACTGATGTTAGAATCGTGCAACATGATCACTGAAAGAAGTCTCAATCAGCTTGGTTTGTACTGCTCCTCACTAGAGGAGCTTGATCTTACTGATTGTTGTGGTGTGAATGACAAAGGACTTGAATGCTTATCAAGATGTTCACAATTGTTAAGCTTGAAACTAGGATTATGCACAAACATAACAGACAAAGGGTTGATCAAGATTGGTCTCAATTGCAAAAGGATTCATGAACTCGATTTGTACCGTTGTCTGGGTATTGGGGATGCCGGATTAGAAGCTTTATCAAGCGGTTGCAAGAAGTTGATGAAACTGAACTTATCATACTGTAATAAGCTTACAGATAAAGGGATGGAGTACATCGGCCACCTTGAGGAACTGTGCAACTTAGAAATACGTGGGCTTCATAATGTCACAAGTGTCGGTTTGACAGCAGTTGCAGCTGGAGAAGTAATTCATTTAAAAGAAACATCCCTCATGCATTCTCAAAGACTGAATGAATTAAATGTGGGCTCTTGTGCTGTCTCGGATGTGGGATTATGCATGATGATGGGGAACCTTACATGCCTTCAGGATGCTAAGCTCGTGAACCTAAACAAAGTCTCAGTACGAGGTTTTGAGCTTGCACTTAGAACCTGTTGCCTCCGGATCAAGAAAGTCAAATTGCACGCATCTCTCAGGTTCATGCTCTCCTCGGAGATACTCGAAATTCTGAATGCTTGGGATATCGAAGATCAAAATTCATGCATTTCGAACATACAACTTGAGATGGGAAGAAGTGTGAACTCAAGTCCAAGTTCTGTCTTGAGTGCTGCAATTAGAGCAACTCTTAATGAAGCTAGACGAGCCATAGAGTCTATAACAAAGTTCAGCACATTCTCGTTTAGCTACCGTGAAGAAATGGCAATCGAGGACTGCAAGGAGCTTCTTGATTTCTCTGTTTCAGAGCTTGCCTGGTCATTAGCTGAGATGAAAAGGATTCGTGCAGGCAAAAACGAAGCTCCCGACGAAGGGAATCTAAAAGCATGGCTGAGCGCTGCTCTCAGCAACCAAGACACATGCCTTGAAGGCTTTGAAGGCACAGACAGGCATATTGTAGGTTTCATTAGAGGTAGTTTGAAGCAAGTTACACTGCTCATTAGCAATGTCTTGGCATTGTACACTCAATTACACAGCTTACCATTTCAACCCCCGCGGAATGAAACAATAGAGAAAACCAAAAATTCGGAGTTTCCAGATTGGATGATGGATAGCGAGCACAAGCTTGTGAAATCTCATCCACGTAACGTCCATGTTGATGCAGTCGTGGCTTTGGATGGAAGCGGAGATTTCCGTTCTATCACAGAAGCTGTAAATGAAACTCCAAATTATAGCAATAGAAGGTACATCATATATGTGAAGAAGGGAGTCTATAAAGAAAATATCGACATGAAGCGGAAGAAAACCAACATAATGTTTATTGGAGATGGTATTGGAGAAACAATAGTGACGGGAAATCGCAATTTTCTGCAGGGATGGACTACTTTCAGAACTGCAACTGTTGCTGTCTCTGGGAAGGGATTCATAGCAAGAGACATGACATTTCGCAACACGGCTGGACCAGAAAACCATCAAGCAGTGGCACTCCGAGTTGACTCTGATCAATCAGCCTTCTTTCGGTGCAGCTTCGAAGGCCATCAAGACACGCTCTACGTCCACTCTCTACGCCAATTTTACAGGGAATGCAACATATATGGCACCATAGACTACATCTTTGGCAACGGGGCAGCAGTATTCCAAAAATGCAACATCTACACTAGAGTTCCGCTCCCACTCCAGAAGGTCACGATCACGGCACAAGGTCGAAAGTCCCCGCACCAGAGTACGGGGTTTTCAATCCAAGACAGCTTTATTTATGCAACTCAGCCAACGTATCTTGGAAGACCATGGAAGTTATATTCAAGGACTGTCTTCTTGAACACTTACATGAGCGGTTTGGTACAACCTAGAGGATGGCTTGAGTGGTATGGCAATTTTGCTTTAGGCACATTGTGGTATGGAGAATATAAAAACTATGGACCTGGTGCATCCCTTTCGGGTCGGGTCAAATGGCCTGGGTACCACGATATCCGTGACCCTGCCATGGCTAGGTTCTTCACCTCCGAGCACTTCATTGACGGTCGATCATGGTTGCCAAAGACGGTCTGCAATTTGAGAGATTTAAATTTTGTCTTAATTAACTTTTATTCTACATTTTCCATTGCTTTTAATTACTTTCTTGTTTTGGTTGAATGTTTAGAAATAGTAATTTTATTTGTAGCTCATTTTCATAGTGAGAACATCTCTAAAGAAGCTTTCATAAGATCAAGGAATCTTTTGTCTCAACTCAAAGAGGTAAATAATAATTTGTTACTTGTGCATTTATGTTACACTCTACCATAA 3618 43.17 MDRTHFSIFPFLCSFRFFFLQIPQMPSPFLVLPDEILIRVRQNLTHHSDSNSWRLVCKDFHRIDLISRKSLRVRRIEFLLSLIAKFENIDELDLSICSRISDGTVSIFMGFASSRLRSLILTRSAGLSYLGLERMMRACTGLQMVDMSYSWRFGDREAAAVSNCEGLKEVRLDKCLGVTDVGLARIVVGCERLEKLSLKWCLQVTDLGVELLCKKCFHLKLLDLSYLKVTNESLRSISSLPKLEILVMVGCLSVDDVGLQYLEHGCPSLKELDISRCGGISLYGLTSILRGHDGLAQLDAGYCFSELSADSIYRLKNLKCLKAIRLDGTQLSSTFFNAISIHCEYLVELGFSKCKGVTDANIIQLISRCSSLKVLNLTCCHSITDVAISKMASSCQKLMSLMLESCNMITERSLNQLGLYCSSLEELDLTDCCGVNDKGLECLSRCSQLLSLKLGLCTNITDKGLIKIGLNCKRIHELDLYRCLGIGDAGLEALSSGCKKLMKLNLSYCNKLTDKGMEYIGHLEELCNLEIRGLHNVTSVGLTAVAAGEVIHLKETSLMHSQRLNELNVGSCAVSDVGLCMMMGNLTCLQDAKLVNLNKVSVRGFELALRTCCLRIKKVKLHASLRFMLSSEILEILNAWDIEDQNSCISNIQLEMGRSVNSSPSSVLSAAIRATLNEARRAIESITKFSTFSFSYREEMAIEDCKELLDFSVSELAWSLAEMKRIRAGKNEAPDEGNLKAWLSAALSNQDTCLEGFEGTDRHIVGFIRGSLKQVTLLISNVLALYTQLHSLPFQPPRNETIEKTKNSEFPDWMMDSEHKLVKSHPRNVHVDAVVALDGSGDFRSITEAVNETPNYSNRRYIIYVKKGVYKENIDMKRKKTNIMFIGDGIGETIVTGNRNFLQGWTTFRTATVAVSGKGFIARDMTFRNTAGPENHQAVALRVDSDQSAFFRCSFEGHQDTLYVHSLRQFYRECNIYGTIDYIFGNGAAVFQKCNIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSFIYATQPTYLGRPWKLYSRTVFLNTYMSGLVQPRGWLEWYGNFALGTLWYGEYKNYGPGASLSGRVKWPGYHDIRDPAMARFFTSEHFIDGRSWLPKTVCNLRDLNFVLINFYSTFSIAFNYFLVLVECLEIVILFVAHFHSENISKEAFIRSRNLLSQLKEVNNNLLLVHLCYTLP 1205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32333112 32340562 + ClCG03G017180.2 Cla03g01644 270144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01644 1205 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 644 790 IPR035513 -
Cla03g01644 1205 PANTHER PECTINESTERASE 634 1128 - -
Cla03g01644 1205 SUPERFAMILY RNI-like 77 331 - -
Cla03g01644 1205 ProSitePatterns Pectinesterase signature 1. 857 876 IPR018040 -
Cla03g01644 1205 Gene3D Ribonuclease Inhibitor 216 309 IPR032675 -
Cla03g01644 1205 CDD PMEI-like_4 662 789 - -
Cla03g01644 1205 SUPERFAMILY RNI-like 315 543 - -
Cla03g01644 1205 Pfam Leucine Rich repeat 498 520 IPR001611 GO:0005515
Cla03g01644 1205 Pfam Leucine Rich repeat 215 238 IPR001611 GO:0005515
Cla03g01644 1205 Pfam Leucine Rich repeat 369 392 IPR001611 GO:0005515
Cla03g01644 1205 Pfam Leucine Rich repeat 472 495 IPR001611 GO:0005515
Cla03g01644 1205 Pfam Leucine Rich repeat 420 444 IPR001611 GO:0005515
Cla03g01644 1205 Gene3D Invertase/pectin methylesterase inhibitor family protein 641 790 IPR035513 -
Cla03g01644 1205 Pfam Pectinesterase 832 1119 IPR000070 GO:0030599|GO:0042545
Cla03g01644 1205 ProSitePatterns Pectinesterase signature 2. 976 985 IPR033131 -
Cla03g01644 1205 SUPERFAMILY Pectin lyase-like 831 1127 IPR011050 -
Cla03g01644 1205 SMART PMEI_2 628 785 IPR006501 GO:0004857
Cla03g01644 1205 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 634 1128 - -
Cla03g01644 1205 SMART LRR_CC_2 369 394 IPR006553 -
Cla03g01644 1205 SMART LRR_CC_2 216 240 IPR006553 -
Cla03g01644 1205 SMART LRR_CC_2 421 446 IPR006553 -
Cla03g01644 1205 SMART LRR_CC_2 498 523 IPR006553 -
Cla03g01644 1205 SMART LRR_CC_2 190 215 IPR006553 -
Cla03g01644 1205 SMART LRR_CC_2 343 368 IPR006553 -
Cla03g01644 1205 SMART LRR_CC_2 86 111 IPR006553 -
Cla03g01644 1205 SMART LRR_CC_2 561 585 IPR006553 -
Cla03g01644 1205 SMART LRR_CC_2 472 497 IPR006553 -
Cla03g01644 1205 SMART LRR_CC_2 164 189 IPR006553 -
Cla03g01644 1205 SMART LRR_CC_2 447 471 IPR006553 -
Cla03g01644 1205 SMART LRR_CC_2 524 548 IPR006553 -
Cla03g01644 1205 SMART LRR_CC_2 395 420 IPR006553 -
Cla03g01644 1205 SMART LRR_CC_2 241 265 IPR006553 -
Cla03g01644 1205 SMART LRR_CC_2 266 291 IPR006553 -
Cla03g01644 1205 Gene3D - 827 1132 IPR012334 -
Cla03g01644 1205 Gene3D Ribonuclease Inhibitor 472 565 IPR032675 -
Cla03g01644 1205 Gene3D Ribonuclease Inhibitor 310 471 IPR032675 -
Cla03g01644 1205 Gene3D Ribonuclease Inhibitor 26 215 IPR032675 -
Cla03g01644 1205 Pfam Plant invertase/pectin methylesterase inhibitor 643 785 IPR006501 GO:0004857
Cla03g01644 1205 TIGRFAM PME_inhib: pectinesterase inhibitor domain 643 790 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01644 Cla-Chr3:32333112 Cla10g00004 Cla-Chr10:132994 4.41E-155 dispersed
Cla08g01334 Cla-Chr8:26203630 Cla03g01644 Cla-Chr3:32333112 3.43E-20 dispersed
Cla09g00282 Cla-Chr9:2743796 Cla03g01644 Cla-Chr3:32333112 9.60E-11 dispersed
Cla09g02015 Cla-Chr9:37736161 Cla03g01644 Cla-Chr3:32333112 6.84E-72 dispersed
Cla10g02124 Cla-Chr10:36906418 Cla03g01644 Cla-Chr3:32333112 3.30E-113 dispersed
Cla11g00282 Cla-Chr11:3251337 Cla03g01644 Cla-Chr3:32333112 1.39E-07 dispersed
Cla03g01644 Cla-Chr3:32333112 Cla03g01645 Cla-Chr3:32341528 1.33E-118 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01644 K01051 K10268 csv:101222297 1055.05