Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01645 ATGGGTTATAGAGATGATGATTCTCAGAACAAGAAAAGATACGCCATCATCGGTGTCTCGTCCATGTTACTAGTGGCGATGGTGGTGGCGGTGACGGTTGGCGTTAACCTAAACCAAGACGAAACGAGCGAACCGGCTACCGGAAACAAAGCCCATGAAATATCTGCTTCAGTGAAAGCCATTAAAGCCATTTGTCAACCTACTGATTATAAACAAGAATGTGTTGCTAGTCTCAAGGCTGCTGGCAACAACTCTTCAGACCCAAAGGAATTGGTTCAAGCTGGCTTCAAGGCTGCCATGAAGTTGATCCAAGCTGCTGCTAATAAATCTGTCACCTTGAAAGAGCTTGAGAAAGACCCTAGAACCTCCAAGGCCCTTGCTGGTTGTAAAGAGCTCATGGATTTTGCTGTTGACGAGCTTAAATACTCGATGAACAAGCTCGGCGAGTTTGATATTAGTAAACTCGATGAGATGTTGATCGATATTAAGATCTGGCTCAGTGCTACCATTACTTATCAGGAAACTTGCTTGGATGGGTTCGAGAACACAACCGGAAATGCAGCAGAGAAGATGAAAAAGGCATTGAAGACATCAATGCGGTTGAGCAGCAATGGGTTGGCCATGGTGTCGCAAATTTCGTCCATGTTGACAGAGTTGCAGATTCCAGGGATCAGCCGAAGGCGACTTCTCGAGATTCCGGTTCTTGGGCACGACGATTACCCCGACTGGGCGAACCCCGGGATGCGACGACTCCTAGCTGCCGGGACGAAAGTGAAGCCAAACGTTGTGGTGGCCAAGGATGGAAGTGGTCAGTTCAGGACCATTCAAGAGGCTCTTGACAAAGTTCCAAAGAGGAAGAACAATGCAACCTTTGTGATTCATATCAAGGCAGGAGTGTACAAGGAATATCTCATCATCAAAAAATCTCTCACCCATTTGATGCTCATTGGTGATGGCCCCAAAAAGACCATTATCACTGGAAGTAAAAACTTCATTGATGGCACACCCACCTTCAAAACTGCAACAGTCGCTGTGACAGCAGAACACTTTATGGCAAGAGATATCGGGTTCGAAAACACAGCAGGGCCACATAAGCACCAAGCAGTTGCGCTACGAGTCCAAGCCGACAAAGCCGTATTCTACAACTGCGAAATGCATGGCTACCAAGACACTCTCTACGTCCACACCATGCGTCAGTTCTACCGCGATTGCACCATCTCCGGCACCATCGACTTCATCTTCGGTGATGCAGCTGCCATCTTCCAAAGTTGCACCTTCCTAGTCCGTAAGCCCCTTCCAAACCAACAATGCATCGTAACGGCACACGGACGCAAAGAACGCCGCCAACCATCCGCCCTCATCATCCAAAACTGTTCGTTCAAGGCCGACACCGACCTGGCCCCAGTACAAAAACAGTTCCGATCCTTCCTTGGGCGACCATGGAAGGAATATTCGAGAACAATCATCATGGAATCATACATTGGTGATTTGATTCAACCAGAAGGGTGGTTGCCATGGGCTGGAGATTGGGGTTTGAAGACATGTTTTTACACCGAGTTCAACAATTATGGGCCAGGATCTGATAAGTCAAAGAGGGTGAAATGGAGAGGGATTAAGACCATTACGCCACAACATGCTTTGGATTTTACTGCCGGAAGGTTTGTTATGGGGGATAGATGGATTAAGCCCACCGGAGTTCCATATGTCTCCGGCATGACCAGGACCGGCGGCGCGGCTGCAACAGGCGGAGCTGCTCATTGA 1761 48.32 MGYRDDDSQNKKRYAIIGVSSMLLVAMVVAVTVGVNLNQDETSEPATGNKAHEISASVKAIKAICQPTDYKQECVASLKAAGNNSSDPKELVQAGFKAAMKLIQAAANKSVTLKELEKDPRTSKALAGCKELMDFAVDELKYSMNKLGEFDISKLDEMLIDIKIWLSATITYQETCLDGFENTTGNAAEKMKKALKTSMRLSSNGLAMVSQISSMLTELQIPGISRRRLLEIPVLGHDDYPDWANPGMRRLLAAGTKVKPNVVVAKDGSGQFRTIQEALDKVPKRKNNATFVIHIKAGVYKEYLIIKKSLTHLMLIGDGPKKTIITGSKNFIDGTPTFKTATVAVTAEHFMARDIGFENTAGPHKHQAVALRVQADKAVFYNCEMHGYQDTLYVHTMRQFYRDCTISGTIDFIFGDAAAIFQSCTFLVRKPLPNQQCIVTAHGRKERRQPSALIIQNCSFKADTDLAPVQKQFRSFLGRPWKEYSRTIIMESYIGDLIQPEGWLPWAGDWGLKTCFYTEFNNYGPGSDKSKRVKWRGIKTITPQHALDFTAGRFVMGDRWIKPTGVPYVSGMTRTGGAAATGGAAH 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32341528 32343466 + ClCG03G017190.2 Cla03g01645 270145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01645 586 Pfam Pectinesterase 261 558 IPR000070 GO:0030599|GO:0042545
Cla03g01645 586 PANTHER PECTINESTERASE 16 575 - -
Cla03g01645 586 SUPERFAMILY Pectin lyase-like 256 571 IPR011050 -
Cla03g01645 586 Gene3D - 255 572 IPR012334 -
Cla03g01645 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 213 IPR035513 -
Cla03g01645 586 ProSitePatterns Pectinesterase signature 1. 287 306 IPR018040 -
Cla03g01645 586 SMART PMEI_2 56 208 IPR006501 GO:0004857
Cla03g01645 586 CDD PMEI-like_3 63 214 - -
Cla03g01645 586 PANTHER PECTINESTERASE 16 575 - -
Cla03g01645 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 213 IPR035513 -
Cla03g01645 586 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 212 IPR006501 GO:0004857
Cla03g01645 586 Pfam Plant invertase/pectin methylesterase inhibitor 60 208 IPR006501 GO:0004857
Cla03g01645 586 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01645 Cla-Chr3:32341528 Cla06g00463 Cla-Chr6:5642876 0 dispersed
Cla03g01644 Cla-Chr3:32333112 Cla03g01645 Cla-Chr3:32341528 1.33E-118 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01645 K01051 - csv:101207393 1074.31