Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla03g01661 | ATGGCTGGTAAAGTTCAAATTCCTACCAAAAACTCAGCGCTTATTTCTATGATTGCTGATGAGGATACCGTGGTTGGATTTCTTCTTGCTGGAGTTGGTAATGTTGACCTGCGAAGAAAAACTAATTACCTTATAGTGGACTCAAAGACAACTGTTAAACAAATTGAAGATGCTTTCAAAGAGTTCACTACAAGGGAGGATATTGCAATAGTGATGATCAGTCAATATGTTGCAAACATGATCAGGTTTCTGGTAGATAGCTATAACAAGCCAATTCCTGCAATATTGGAGATTCCTTCCAAGGATCATCCATATGACCCTGCACATGATTCAGTTCTTTCGCGAGTAAAGAACCTATTTTCTACCGAATCAGTGGCATCTGGGAGGCGTTAA | 393 | 39.44 | MAGKVQIPTKNSALISMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTVKQIEDAFKEFTTREDIAIVMISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSTESVASGRR | 130 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 32466281 | 32470479 | - | ClCG03G017370.1 | Cla03g01661 | 270161 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla03g01661 | 130 | PIRSF | V-ATP_synth_F | 4 | 123 | IPR005772 | GO:0033180|GO:0046961|GO:1902600 | |
| Cla03g01661 | 130 | PANTHER | VACUOLAR ATP SYNTHASE SUBUNIT F | 1 | 130 | - | - | |
| Cla03g01661 | 130 | Pfam | ATP synthase (F/14-kDa) subunit | 15 | 116 | IPR008218 | GO:0034220|GO:0046961 | |
| Cla03g01661 | 130 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT F | 1 | 130 | - | - | |
| Cla03g01661 | 130 | TIGRFAM | V_ATP_synt_F: V-type ATPase, F subunit | 11 | 124 | IPR005772 | GO:0033180|GO:0046961|GO:1902600 | |
| Cla03g01661 | 130 | Gene3D | ATPase, V1 complex, subunit F | 9 | 122 | IPR036906 | GO:0034220 | |
| Cla03g01661 | 130 | SUPERFAMILY | AtpF-like | 15 | 118 | IPR036906 | GO:0034220 |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla03g01661 | K02151 | ATPeV1F, ATP6S14; V-type H+-transporting ATPase subunit F | - | csv:101215239 | 250.366 |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cla08g01633 | . | 1 | 998 | Primary Pumps ATPases(2) | AT1G10130 | 83.3 | 0.0e+00 | 1629.4 | |
| Cla02g02031 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.6 | 0.0e+00 | 1345.9 | |
| Cla02g00497 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.8 | 1.2e-292 | 1002.7 | |
| Cla08g01448 | . | 1 | 854 | Primary Pumps ATPases(2) | AT2G28520 | 55.5 | 2.8e-273 | 938.3 | |
| Cla02g00497 | . | 6 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.7 | 0.0e+00 | 1233.8 | |
| Cla08g01448 | . | 1 | 859 | Primary Pumps ATPases(2) | AT2G21410 | 64.9 | 0.0e+00 | 1109.7 | |
| Cla02g02031 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.6 | 3.0e-299 | 1024.6 | |
| Cla02g00497 | . | 8 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1235.7 | |
| Cla08g01448 | . | 1 | 859 | Primary Pumps ATPases(2) | AT4G39080 | 65.5 | 0.0e+00 | 1110.1 | |
| Cla02g02031 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.5 | 3.3e-298 | 1021.1 | |
| Cla08g01441 | . | 160 | 298 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 3.8e-61 | 231.1 | |
| Cla11g01536 | . | 101 | 238 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.5e-60 | 229.2 | |
| Cla11g01536 | . | 75 | 238 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 3.3e-66 | 248.4 | |
| Cla08g01441 | . | 2 | 164 | Primary Pumps ATPases(2) | AT1G75630 | 79.7 | 1.8e-64 | 242.7 | |
| Cla11g01536 | . | 76 | 238 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.6e-74 | 274.2 | |
| Cla08g01441 | . | 3 | 164 | Primary Pumps ATPases(2) | AT2G16510 | 98.1 | 5.6e-72 | 267.3 | |
| Cla11g01536 | . | 74 | 195 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 5.6e-53 | 203.8 | |
| Cla08g01441 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.3e-52 | 202.6 | |
| Cla08g01299 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.2 | 3.2e-70 | 261.9 | |
| Cla05g01759 | . | 2 | 201 | Primary Pumps ATPases(2) | AT2G25610 | 64.5 | 1.7e-55 | 213.0 | |
| Cla11g01536 | . | 101 | 238 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.1e-60 | 227.6 | |
| Cla08g01441 | . | 161 | 298 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.1e-60 | 227.6 | |
| Cla08g01299 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 1.6e-71 | 266.2 | |
| Cla05g01759 | . | 19 | 201 | Primary Pumps ATPases(2) | AT4G32530 | 63.8 | 1.0e-57 | 220.3 | |
| Cla03g00170 | . | 1 | 1097 | Primary Pumps ATPases(2) | AT1G07810 | 78.2 | 0.0e+00 | 1655.6 | |
| Cla03g00170 | . | 1 | 1097 | Primary Pumps ATPases(2) | AT1G07670 | 78.0 | 0.0e+00 | 1655.2 | |
| Cla08g01633 | . | 1 | 998 | Primary Pumps ATPases(2) | AT1G10130 | 83.3 | 0.0e+00 | 1629.4 | |
| Cla03g00170 | . | 22 | 1078 | Primary Pumps ATPases(2) | AT4G00900 | 63.8 | 0.0e+00 | 1304.3 | |
| Cla03g01661 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.1 | 4.0e-57 | 217.6 | |
| Cla02g00408 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 4.7e-268 | 920.2 | |
| Cla10g01933 | . | 300 | 407 | Primary Pumps ATPases(2) | AT3G01390 | 80.6 | 3.9e-37 | 151.0 | |
| Cla01g00801 | . | 1 | 376 | Primary Pumps ATPases(2) | AT1G12840 | 83.2 | 1.3e-180 | 629.4 | |
| Cla09g02164 | . | 1027 | 1274 | Primary Pumps ATPases(2) | AT3G58730 | 82.3 | 1.1e-111 | 399.8 | |
| Cla10g01560 | . | 43 | 495 | Primary Pumps ATPases(2) | AT3G42050 | 77.7 | 2.0e-201 | 698.7 | |
| Cla11g01536 | . | 76 | 238 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.6e-74 | 274.2 | |
| Cla08g01441 | . | 3 | 164 | Primary Pumps ATPases(2) | AT2G16510 | 98.1 | 5.6e-72 | 267.3 | |
| Cla02g00408 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.9 | 3.0e-270 | 927.5 | |
| Cla05g01452 | . | 92 | 273 | Primary Pumps ATPases(2) | AT1G64200 | 73.0 | 1.7e-64 | 242.7 | |
| Cla02g00408 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 9.8e-266 | 912.5 | |
| Cla02g02031 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.6 | 0.0e+00 | 1345.9 | |
| Cla02g00497 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.8 | 1.2e-292 | 1002.7 | |
| Cla08g01448 | . | 1 | 854 | Primary Pumps ATPases(2) | AT2G28520 | 55.5 | 2.8e-273 | 938.3 | |
| Cla10g01421 | . | 98 | 488 | Primary Pumps ATPases(2) | AT3G28715 | 82.6 | 5.4e-186 | 647.1 | |
| Cla05g01452 | . | 92 | 310 | Primary Pumps ATPases(2) | AT4G11150 | 76.4 | 1.6e-85 | 312.8 | |
| Cla09g00150 | . | 1 | 623 | Primary Pumps ATPases(2) | AT1G78900 | 93.3 | 0.0e+00 | 1171.4 | |
| Cla02g00408 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 4.7e-268 | 920.2 | |
| Cla02g00408 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.9 | 3.0e-270 | 927.5 | |
| Cla02g00408 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 9.8e-266 | 912.5 | |
| Cla01g00801 | . | 1 | 376 | Primary Pumps ATPases(2) | AT1G12840 | 83.2 | 1.3e-180 | 629.4 | |
| Cla09g02164 | . | 1027 | 1274 | Primary Pumps ATPases(2) | AT3G58730 | 82.3 | 1.1e-111 | 399.8 | |
| Cla05g01452 | . | 92 | 310 | Primary Pumps ATPases(2) | AT4G11150 | 76.4 | 1.6e-85 | 312.8 | |
| Cla05g01452 | . | 92 | 310 | Primary Pumps ATPases(2) | AT3G08560 | 68.5 | 7.7e-75 | 277.3 | |
| Cla05g01452 | . | 92 | 273 | Primary Pumps ATPases(2) | AT1G64200 | 73.0 | 1.7e-64 | 242.7 | |
| Cla03g01661 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.1 | 4.0e-57 | 217.6 | |
| Cla10g01933 | . | 300 | 407 | Primary Pumps ATPases(2) | AT3G01390 | 80.6 | 3.9e-37 | 151.0 | |
| Cla10g01560 | . | 43 | 495 | Primary Pumps ATPases(2) | AT3G42050 | 77.7 | 2.0e-201 | 698.7 | |
| Cla02g02031 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.6 | 0.0e+00 | 1345.9 | |
| Cla02g00497 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.8 | 1.2e-292 | 1002.7 | |
| Cla08g01448 | . | 1 | 854 | Primary Pumps ATPases(2) | AT2G28520 | 55.5 | 2.8e-273 | 938.3 | |
| Cla02g00497 | . | 6 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.7 | 0.0e+00 | 1233.8 | |
| Cla08g01448 | . | 1 | 859 | Primary Pumps ATPases(2) | AT2G21410 | 64.9 | 0.0e+00 | 1109.7 | |
| Cla02g02031 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.6 | 3.0e-299 | 1024.6 | |
| Cla02g00497 | . | 8 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1235.7 | |
| Cla08g01448 | . | 1 | 859 | Primary Pumps ATPases(2) | AT4G39080 | 65.5 | 0.0e+00 | 1110.1 | |
| Cla02g02031 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.5 | 3.3e-298 | 1021.1 | |
| Cla08g01441 | . | 160 | 298 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 3.8e-61 | 231.1 | |
| Cla11g01536 | . | 101 | 238 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.5e-60 | 229.2 | |
| Cla11g01536 | . | 74 | 195 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 5.6e-53 | 203.8 | |
| Cla08g01441 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.3e-52 | 202.6 | |
| Cla11g01536 | . | 101 | 238 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.1e-60 | 227.6 | |
| Cla08g01441 | . | 161 | 298 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.1e-60 | 227.6 | |
| Cla11g01536 | . | 75 | 238 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 3.3e-66 | 248.4 | |
| Cla08g01441 | . | 2 | 164 | Primary Pumps ATPases(2) | AT1G75630 | 79.7 | 1.8e-64 | 242.7 | |
| Cla11g01536 | . | 76 | 238 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.6e-74 | 274.2 | |
| Cla08g01441 | . | 3 | 164 | Primary Pumps ATPases(2) | AT2G16510 | 98.1 | 5.6e-72 | 267.3 | |
| Cla08g01299 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 1.6e-71 | 266.2 | |
| Cla05g01759 | . | 19 | 201 | Primary Pumps ATPases(2) | AT4G32530 | 63.8 | 1.0e-57 | 220.3 | |
| Cla08g01299 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.2 | 3.2e-70 | 261.9 | |
| Cla05g01759 | . | 2 | 201 | Primary Pumps ATPases(2) | AT2G25610 | 64.5 | 1.7e-55 | 213.0 | |
| Cla10g01421 | . | 98 | 488 | Primary Pumps ATPases(2) | AT3G28710 | 84.7 | 4.7e-193 | 670.6 | |
| Cla10g01421 | . | 98 | 488 | Primary Pumps ATPases(2) | AT3G28715 | 82.6 | 5.4e-186 | 647.1 | |
| Cla03g00170 | . | 1 | 1097 | Primary Pumps ATPases(2) | AT1G07810 | 78.2 | 0.0e+00 | 1655.6 | |
| Cla03g00170 | . | 22 | 1078 | Primary Pumps ATPases(2) | AT4G00900 | 63.8 | 0.0e+00 | 1304.3 | |
| Cla08g01633 | . | 1 | 998 | Primary Pumps ATPases(2) | AT1G10130 | 83.3 | 0.0e+00 | 1629.4 | |
| Cla03g00170 | . | 1 | 1097 | Primary Pumps ATPases(2) | AT1G07670 | 78.0 | 0.0e+00 | 1655.2 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0003865 | 2 | 1 | 1 | 3 | 2 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 1 | 1 | 1 | 2 | 2 | 0 | 2 | 1 | 2 | 2 | 2 | 1 | 43 |