Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla03g01682 | ATGGGGTCTTTTCTAAAGCCAGAGAATGCTTTGAAGCGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCCCTTCATAATCTTATCACTTCGAAGAAATATCGAGCATGGCAGAAACCTCTTGAGAGGATTATGTTTAAGTATGTTGACCTCTGTGTGGACATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTAATTCAATACCGTATTGTTTGCCAGCAAGTTAATGTTACTTCTTTAGAGGAAGTAATCAAGCACTTTATGCATCTCTCCACTGAGAAGGCAGAGCAGGCTCGTAGTCAAGCTCAAGCTTTAGAAGAAGCTCTGGACGTTGATGATTTGGAAGCTGATAAAAGGCCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAGAGGGGAAAGGATAGATCTGATCGAGAACTTGTTACCCCTTGGTTTAAATTTCTGTGGGAGACATATCGAACGGTTCTTGAGATACTAAGGAATAACTCAAAGTTGGAGGCACTTTATGCGATGACAGCTCATCGTGCCTTCCAGTTCTGTAAGGTGTATAAAAGAACAACTGAATTTCGCAGATTATGTGAAATTATCCGAAATCATCTTGCTAATCTCAACAAGTACAGAGACCAAAGAGATCGGCCCGACCTTTCTGCTCCAGAGAGCTTGCAATTGTACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACAGAACTTGAGCTCTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATTCATGGTTTGATGTGCATGGTGAAGAAAACACCTAAACCATCCTTGATGGTGGTGTATTATGTCAAATTAACAGAGATCTTCTGGATATCGGATTGGAATCTTTACCATGCCTATGCATGGCTTAAACTTTTCTCCCTTCAGAAGAGTTTCAACAAAAATCTAAGCCAGAAGGATTTACAGCTGATAGCTTCATCTGTTGTTTTAGCAGCTCTTGCAGTGTCCCCCTATGACTCCAAGCATGGTGCTTCTCATTTAGAACTTGAACATGAGAAAGAGCGAAATTTGAGGATGGCGAATCTTATAGGGTTCAATTTAGACTCCAAACTTGAAAGTAGAGATGTGCTTTCAAGGGCAAATCTTCTTTCTGAACTGGTGTCTAAAGGAGTCCTGAGCTGCGCAACTCAGGATGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTCTTCCCTCTTGATCTTGCAACAAAATTGCAACCCTTACTAAACAAAATATCAAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCCGAAGTGCAATTGTCCCAATATGTTCCGGCTCTTGAAAAACTTGCCACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCAGTCTATGAAAATTGAGAGTCTATCACAGATGATCCCATTTTTTGATTTTTCTGCCGTGGAGAAAATATCAGTTGATGCAGTTAAACAAAATTTTATTGCCATGAAAGTTGATCATTCAAGGAACGTTGTGCTATTTGGCAATTTGGGTATTGAATCCGATGGGCTTCGAGACCACCTGACTGTTCTTGCTGAATCCTTAAACAAAGCAAGAGCTATGATCTCTCCTCCAGTTGGGAAAGCATCAAAAACAGGTGACATATTGCCTGATTTGGCAGATATTGTTGATAAAGAGCACAAAAGGCTGCTTGCTCGGAAATTAATAATTGAGAAAAGGAAGGAAGAGCAGGAACGTCAACTTTTGGAAATGGAACGTGAGGAGGAATCAAAAAGGTTAAAATTACTGAAGATAAGCGAAGAGGCTGAGCAGAAGCGGCTTGCAGCAGAATATGAACAAAGGAAAAACCAACGGCTTCGTAGAGAAATAGAAGAACGAGAACTTGAAGAAGCACAGGCTTTACTTCAGGAAGCTGAAAAGCGTGTTGGTAAAAGGAAGGGAAGCAGGAAGCCAGTTCTTGACTCTGAAAAGTTGACGAAACAAACTTTAATGCAATTGGCCCTTACTGAACAATTAAGGGAGAGGCAGGAAATGGAGAAGAAATTACAGAAGCTAGCCAAAACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCTGCAACGTTAATTGAAGCTGCATTTCAGCAACGTTTGCATGAAGAGAGAATGATTCACGAACGTGATCAGCAGCTCGAGGTTGAGCTAAGCAAGCAGCGCCACGAAGGTGACCTCAAGGAGAAGAATCGATTGGCTAGAATGTTGGAGAGTAAGAAAATTTTCCAAGAAAGAGTCGTGAATCTTCGCCAAGAGGAGTTCAGCAGACGTAGAGCTGAGAGAGAAGAACAGATCAGGCAAGTAATTCAGGCTCGGAAAGCAGAAAGGGAGGCTAAGAGGAAGACAATCTTTTATGTAAGGCGTGAAGAGGAGAGGATTAGAATATTACGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAGTCCGAGAGGAAAAAGAGAGAAGAAGCTGAACGCAAGGCTAAATTGGATGAAATTGCTGAGAAGCAGAGACAAAGGGAGCGAGAATTGGAAGAAAAGGAAAGACTGCGGAAAGAAATGCTCTTTGGTGGTGGCAGATCAACTGATCCGCCTGCTAGACCTGATGTTGCTACCGGTTCTCAGCCTCTGGAGTCTGGAACCGCTGCTCCTGCTGCAGCAGCCGCCGCCGCCTCCGCCACATCTCCAGCAAAATACGTGCCAAGGTTTCGACGGACAGAAGGCTCTAGCCCTAATGCACCACCACCTGAATCCGATCGATGGGGAAGCAGCAGGCCTAATAATCGACCATCTCAACCGGATAGCTGGCGCAGTGATGACCGTAGACCGGCTCTTGGAAGTTCAAGGTCGTCATGGTCCTCATCCCGAGCTTCTACTCGTTCTAGCACGGACCGTTGA | 2913 | 43.77 | MGSFLKPENALKRAEELINVGQKQDALQALHNLITSKKYRAWQKPLERIMFKYVDLCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGERGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDWNLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVVLAALAVSPYDSKHGASHLELEHEKERNLRMANLIGFNLDSKLESRDVLSRANLLSELVSKGVLSCATQDVKDLYHLLEHEFFPLDLATKLQPLLNKISKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQSMKIESLSQMIPFFDFSAVEKISVDAVKQNFIAMKVDHSRNVVLFGNLGIESDGLRDHLTVLAESLNKARAMISPPVGKASKTGDILPDLADIVDKEHKRLLARKLIIEKRKEEQERQLLEMEREEESKRLKLLKISEEAEQKRLAAEYEQRKNQRLRREIEERELEEAQALLQEAEKRVGKRKGSRKPVLDSEKLTKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIEAAFQQRLHEERMIHERDQQLEVELSKQRHEGDLKEKNRLARMLESKKIFQERVVNLRQEEFSRRRAEREEQIRQVIQARKAEREAKRKTIFYVRREEERIRILREEEEARKREESERKKREEAERKAKLDEIAEKQRQRERELEEKERLRKEMLFGGGRSTDPPARPDVATGSQPLESGTAAPAAAAAAASATSPAKYVPRFRRTEGSSPNAPPPESDRWGSSRPNNRPSQPDSWRSDDRRPALGSSRSSWSSSRASTRSSTDR | 970 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 32685298 | 32695271 | - | ClCG03G017600.1 | Cla03g01682 | 270182 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla03g01682 | 970 | Coils | Coil | 603 | 642 | - | - | |
| Cla03g01682 | 970 | Pfam | PCI domain | 374 | 509 | IPR000717 | - | |
| Cla03g01682 | 970 | Coils | Coil | 669 | 699 | - | - | |
| Cla03g01682 | 970 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 441 | 532 | - | - | |
| Cla03g01682 | 970 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT | 1 | 913 | IPR027512 | GO:0005852 | |
| Cla03g01682 | 970 | Coils | Coil | 799 | 858 | - | - | |
| Cla03g01682 | 970 | MobiDBLite | consensus disorder prediction | 916 | 938 | - | - | |
| Cla03g01682 | 970 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A | 1 | 913 | - | - | |
| Cla03g01682 | 970 | ProSiteProfiles | PCI domain profile. | 316 | 513 | IPR000717 | - | |
| Cla03g01682 | 970 | Hamap | Eukaryotic translation initiation factor 3 subunit A [EIF3A]. | 1 | 945 | IPR027512 | GO:0005852 | |
| Cla03g01682 | 970 | MobiDBLite | consensus disorder prediction | 812 | 861 | - | - | |
| Cla03g01682 | 970 | Coils | Coil | 732 | 765 | - | - | |
| Cla03g01682 | 970 | MobiDBLite | consensus disorder prediction | 950 | 970 | - | - | |
| Cla03g01682 | 970 | Gene3D | UVR domain | 217 | 268 | - | - | |
| Cla03g01682 | 970 | Gene3D | - | 269 | 343 | - | - | |
| Cla03g01682 | 970 | Gene3D | - | 363 | 494 | - | - | |
| Cla03g01682 | 970 | Coils | Coil | 93 | 120 | - | - | |
| Cla03g01682 | 970 | Coils | Coil | 561 | 595 | - | - | |
| Cla03g01682 | 970 | MobiDBLite | consensus disorder prediction | 812 | 970 | - | - | |
| Cla03g01682 | 970 | SMART | PINT_4 | 441 | 532 | IPR000717 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla03g00576 | Cla-Chr3:6477702 | Cla03g01682 | Cla-Chr3:32685298 | 0 | dispersed | |
| Cla03g00578 | Cla-Chr3:6510414 | Cla03g01682 | Cla-Chr3:32685298 | 0 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla03g01682 | K03254 | - | csv:101209344 | 1514.98 |