Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01683 ATGGACATGGAATTCCATCGGTTTCAGCCGCTTGTTTCTCTCTCCACCGTCTTTGGTTGCCGGAATTTCGTCGAAGTTTCATATCTCCGATGGAGAAACTCTGAAAATGCTTCTGATGTATGTGGGAGAGAAGCTGCAGAAGCAATGGCAAAGTCTGCAAAGAAGAAGGATCTGATCATCCATGGTTCCGGGAGTATGAATATCAATGGTTCGAGCAACTTTGTCTCGAGTTTTTCGAAGAGGGGTGAGAAAGGAATCAACCAGGACTGCTGCATTGTGTGGGAGGAATTTGGATGTCAAAAGGATATGATATTTTGTGGGGTTTTTGATGGTCATGGACCATGGGGTCATTTCGTTGCAAAGAAGGTTAGAGAGTCAATGCCAACTACTTTGCTTTGCAATTGGCAAGAAGCACTTGTTCAAACTTCTCTTCACCCACATTTGGAACTCAACTCAGCTAAAACACATCTTCATTTCAATTTGTGGGAGCATTCTTATATAGAAGCTTGTGCTGTGGTGGATCAAGAACTCGAGCGACACCGTAAAATCGACACGTTTCATAGTGGAACAACGGCACTTTCCATCGTTCGACAAGGTGATACAATTGTCATAGCAAACCTTGGTGACTCCCGGGCCGTCTTGGCTACAACTTCTAATGATGGAAACTCGACGCCGTCACCAATTCAGCTTACTGTCGATTTCAAACCGAATCTACCTCAGGAAGCTGAAAGGATAACACAATGCAATGGGAGAGTTTTCTGCTTGCAAGATGAACCAGGGACTCCCCGTCTTTGGTTGCCGAACGGGGAAACGCCGGGGCTGTCAATGTCGAGATCGTTTGGCGATTTTTGCGTTAAGCATTTTGGACTTATTTCTGTGCCTGATGTAACACAAAGAAGTTTAACCAACAAAGACTTATTTGTTGTACTTGCAACTGATGGGATATGGGACGTCGTCACGAATCAAGAAGCTGTGCAAATCGTACATTCCACTGTTGATAGACAAAAATCTGCTCGACGACTGGTTGATTATGCTACTCGTGCATGGAAGCGAAAGAGGCCGAATATTGCAACGGACGACATGTCGGTTATCGTCCTCTACCTACATTCTTCACATTTGCATCAACAACCTTTTTGTGTATTGTAG 1146 44.42 MDMEFHRFQPLVSLSTVFGCRNFVEVSYLRWRNSENASDVCGREAAEAMAKSAKKKDLIIHGSGSMNINGSSNFVSSFSKRGEKGINQDCCIVWEEFGCQKDMIFCGVFDGHGPWGHFVAKKVRESMPTTLLCNWQEALVQTSLHPHLELNSAKTHLHFNLWEHSYIEACAVVDQELERHRKIDTFHSGTTALSIVRQGDTIVIANLGDSRAVLATTSNDGNSTPSPIQLTVDFKPNLPQEAERITQCNGRVFCLQDEPGTPRLWLPNGETPGLSMSRSFGDFCVKHFGLISVPDVTQRSLTNKDLFVVLATDGIWDVVTNQEAVQIVHSTVDRQKSARRLVDYATRAWKRKRPNIATDDMSVIVLYLHSSHLHQQPFCVL 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32699425 32704223 - ClCG03G017610.2 Cla03g01683 270183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01683 381 ProSiteProfiles PPM-type phosphatase domain profile. 74 368 IPR001932 -
Cla03g01683 381 SMART PP2C_4 66 366 IPR001932 -
Cla03g01683 381 PANTHER ALPHABET, ISOFORM E-RELATED 29 376 - -
Cla03g01683 381 CDD PP2Cc 73 368 IPR001932 -
Cla03g01683 381 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 29 376 - -
Cla03g01683 381 SUPERFAMILY PP2C-like 70 369 IPR036457 -
Cla03g01683 381 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Cla03g01683 381 Pfam Protein phosphatase 2C 98 347 IPR001932 -
Cla03g01683 381 Gene3D - 63 371 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01683 Cla-Chr3:32699425 Cla11g00927 Cla-Chr11:16035128 4.31E-109 dispersed
Cla02g01501 Cla-Chr2:29542599 Cla03g01683 Cla-Chr3:32699425 3.12E-180 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01683 - - csv:101205485 624.394