Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla03g01708 | ATGGATTACCGGGGTTACAGTAGTAGACTGGAAACAAACAACCCAAATAAAGGCTATGCTCAGGAGCAGGGATCTCTTGCTGATGACTTTATAGATGACTTTCGCTTGCCCATCAACCATAAACCAACAGAAAATGTTGATCTTGATAATGTGGAACAAGCATCATTGGACACACAATTAACTTCATCAAATGTGGGATATAGGCTTCTCCAGAAGATGGGCTGGAAAGGGAAGGGACTAGGGAAGGATGAGCAAGGAATTATTGAGCCAATAAAATCTGGAATGAGAGATCCCAAACTAGGAATTGGAAAACAAGAAGAAGACGATTTTTTCACTGCAGAAGAAAATATCCAGCGGAAAAAACTTGATGTTGAGGTGGAAGAGACAGAAGAACATGCCAAAAAACGGGAGCGGGAATGGTATATCATAGGGGACCATCAACTTTGGAAGGTCTTCAGATTTTCCTGCAGTTTTTATTACCTGGTGGCTTCTACTGCCTGCTTCGTGCACATTATGAAAATCCAGGTTTTAGCAGAACGTGAGGAGAAAATTCAAACTGAGGTCAAAGAAATACGCAAGGTTTTCTATTGTGATCTTTGCAACAAACAGTACAAATTGGCAATGGAATTTGAAGCTCATCTCAGCTCATATGATCATAATCATAGAAAGCAAAATCATCGTTCTCCTTTCTTGCTTTGGATGTCCGTTGAAGCTGCATTGAATCTAAAGTATTGTTTGATGAGATTGCAGCGTTTTAAAGAAATGAGAGAAATGCATGGTTCAAGCAGCCGAGATGACAGAAACAAGCGGGAACAGCAACGTGAAGAGAGAGAGATGGCAAAATTTGCTCAAATTGCGGATGCCCGTAAGAAGCAGCAGCAGATGCTGGAGCAACAAGAAAGAGCAGCCGAGGCTCCTGTTTCTACTGAACTTAGAAATGCTACATCACTTGCAGATCAGGATCAGCGGAAAACATTAAAATTTGGATTCTCTTCTAAAGGTGGCACCTCAAAGGTAAAGCTAAAGCGATAA | 1032 | 41.18 | MDYRGYSSRLETNNPNKGYAQEQGSLADDFIDDFRLPINHKPTENVDLDNVEQASLDTQLTSSNVGYRLLQKMGWKGKGLGKDEQGIIEPIKSGMRDPKLGIGKQEEDDFFTAEENIQRKKLDVEVEETEEHAKKREREWYIIGDHQLWKVFRFSCSFYYLVASTACFVHIMKIQVLAEREEKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKQNHRSPFLLWMSVEAALNLKYCLMRLQRFKEMREMHGSSSRDDRNKREQQREEREMAKFAQIADARKKQQQMLEQQERAAEAPVSTELRNATSLADQDQRKTLKFGFSSKGGTSKVKLKR | 343 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 33030122 | 33033528 | - | ClCG03G017880.1 | Cla03g01708 | 270208 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla03g01708 | 343 | Pfam | G-patch domain | 63 | 103 | IPR000467 | GO:0003676 | |
| Cla03g01708 | 343 | MobiDBLite | consensus disorder prediction | 256 | 343 | - | - | |
| Cla03g01708 | 343 | MobiDBLite | consensus disorder prediction | 309 | 332 | - | - | |
| Cla03g01708 | 343 | Coils | Coil | 119 | 139 | - | - | |
| Cla03g01708 | 343 | MobiDBLite | consensus disorder prediction | 256 | 285 | - | - | |
| Cla03g01708 | 343 | Pfam | Zinc-finger double-stranded RNA-binding | 195 | 222 | IPR022755 | - | |
| Cla03g01708 | 343 | MobiDBLite | consensus disorder prediction | 7 | 21 | - | - | |
| Cla03g01708 | 343 | ProSiteProfiles | G-patch domain profile. | 62 | 107 | IPR000467 | GO:0003676 | |
| Cla03g01708 | 343 | Coils | Coil | 285 | 305 | - | - | |
| Cla03g01708 | 343 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Cla03g01708 | 343 | PANTHER | FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED | 5 | 339 | - | - | |
| Cla03g01708 | 343 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 197 | 219 | IPR013087 | - | |
| Cla03g01708 | 343 | SUPERFAMILY | beta-beta-alpha zinc fingers | 193 | 228 | IPR036236 | - | |
| Cla03g01708 | 343 | SMART | G-patch_5 | 60 | 105 | IPR000467 | GO:0003676 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla03g01708 | Cla-Chr3:33030122 | Cla11g01251 | Cla-Chr11:26029490 | 9.37E-08 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla03g01708 | - | - | cmo:103492095 | 488.034 |