Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01710 ATGACAAGGAAGAAAGTGAAACTTGCTTACATAGCAAATGACTCTGCAAGAAAGGCAACATTCAAGAAGAGGAAGAGAGGGCTTATGAAGAAGGTAAGTGAATTGAGCACTCTTTGTGGGATTGAGGCTTGTGCAATCGTCTTTAGTCCTTACGATTCTCAGCCTGAGCTATGGCCTTCCCCCATTGGAGTCCAGCGCGTTCTCTCCCAGTTCAAGAAGATGCCCGAGATGGAGCAGAGCAAGAAGATGGTGAACCAAGAGACGTTTCTAAGGCAGAGGATCGCAAAGGCGAACGAGCAATTGAAGAAGATGAGAAAGGACAACCGAGAGAAAGAGATCACACGGTTGATGTTTCAAAGCCTCACGGCTACAAAAGGGCTGCATGGCCTCAACATGCTTGATTTGAACGATCTAGGTTGGCTTATTGATCAGAATCTTAAAGACATTGGTACACGCATTGACACTCTAAAAAAGCCTCCGACTCAGCTACAGCCTCAGCCCCCACCTCAACCTTCACAAACTCAACCGCTCACGGCGGCGTGGCTCATGGAGCTTGTGAGCCCTCAGGATCAAATGGGGTTTGTTGGGGATGATATGCTTTTGCCTTTTGGGGATCAAACTTATAACCCTAATAATGCAATGTGGTCCAGTGCCTTTTTCCCTTAG 666 47.15 MTRKKVKLAYIANDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDSQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQSLTATKGLHGLNMLDLNDLGWLIDQNLKDIGTRIDTLKKPPTQLQPQPPPQPSQTQPLTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNPNNAMWSSAFFP 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33072835 33073591 - ClCG03G017900.1 Cla03g01710 270210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01710 221 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cla03g01710 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla03g01710 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla03g01710 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla03g01710 221 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Cla03g01710 221 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 177 - -
Cla03g01710 221 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 177 - -
Cla03g01710 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Cla03g01710 221 MobiDBLite consensus disorder prediction 156 175 - -
Cla03g01710 221 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cla03g01710 221 Coils Coil 87 114 - -
Cla03g01710 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla03g01710 221 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01019 Cla-Chr1:15608734 Cla03g01710 Cla-Chr3:33072835 4.66E-82 dispersed
Cla03g01710 Cla-Chr3:33072835 Cla10g01733 Cla-Chr10:33142285 7.00E-43 dispersed
Cla03g01710 Cla-Chr3:33072835 Cla08g01165 Cla-Chr8:24480113 2.54E-11 transposed
Cla03g01710 Cla-Chr3:33072835 Cla05g02432 Cla-Chr5:35817899 1.57E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60869 PF00319 SRF-TF 6.40E-19 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01710 - - csv:101203059 384.03