Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01715 ATGGGCATCAAGGGTTTAACCAAGCTTTTAGCTGATAATGCCCCCAAGGGCATGAAGGAGCAGAAGTTCGAAACCTATTTCGGCCGCAAAATCGCAATTGATGCCAGCATGAGTATTTATCAATTTCTTATTGTCGTGGGAAGAAGTGGGACTGAGATGCTGACCAACGAAGCTGGTGAAGTCACTAGCCACTTGCAAGGGATGTTTAACCGGACAATAAGGCTTCTCGAAGCTGGAATTAAGCCAGTCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAACAAGAACTTGCAAAACGTTATTCAAAAAGAGTAGATGCTACCGAGGACCTAGCAGATGCTATCGAGGTTGGCAACAAGGAGGACATTGAGAAATTTAGTAAAAGGACGGTGAAGGTTACAAAGCAGCACAATGATGACTGTAAAAGACTCTTGAGGCTCATGGGAGTGCCTGTGATCGAGGCTCCCTCAGAAGCTGAGGCACAATGTGCTGCACTTTGCAAGTTAGGAAAGGTTTATGCTGTGGCGTCAGAAGACATGGATTCACTAACATTTGGATCTCCCAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTGGCTAAGATTTTGGAGGAGCTGAACCTCACCATGGATCAGTTTATCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAATATCCGAGGTATAGGGGGGCAGACTGCTCTAAAGCTTATCCGTCAACATGGGTCTATAGAAACTATATTAGAGAACATAAATAAAGAGAGGTACCAAATTCCAGATGATTGGCCTTATCAAGAGGCCCGGCAGCTTTTTAAAGAACCACTAGGCTTATTAACATTTTTGGTGAATGAGAATGGGTTCAACAGTGAAAGAGTGACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAATCATTTTTCAAGCCCGTCACTAATCCTTCAGTATCCATTAAGCGAAAGGTAAACAAATGTGTACTTAGGTCTCCTAAACCAGGAGCCCAACATAAAGTCTCCCCACAAGCATTTTATTCGTCAAGGACGAATGCCATTGGCAGCCTAGGCATGTCAATGTTAGACCATTCCTCCAAGTACTCGGGGTCAGGGCCATTAGTTATGGCTGTCTGCTTCGGCACATGA 1200 43.67 MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRVDATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIETILENINKERYQIPDDWPYQEARQLFKEPLGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRKVNKCVLRSPKPGAQHKVSPQAFYSSRTNAIGSLGMSMLDHSSKYSGSGPLVMAVCFGT 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33112090 33123472 - ClCG03G017945.1 Cla03g01715 270215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01715 399 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 335 IPR036279 -
Cla03g01715 399 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Cla03g01715 399 Hamap Flap endonuclease 1 [fen]. 1 329 IPR023426 GO:0016788
Cla03g01715 399 Gene3D - 223 286 - -
Cla03g01715 399 CDD H3TH_FEN1-Euk 222 288 - -
Cla03g01715 399 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Cla03g01715 399 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Cla03g01715 399 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Cla03g01715 399 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Cla03g01715 399 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Cla03g01715 399 SMART 53exo3 29 341 IPR002421 GO:0003677
Cla03g01715 399 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
Cla03g01715 399 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518
Cla03g01715 399 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Cla03g01715 399 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 357 IPR006084 -
Cla03g01715 399 SMART xpgineu 147 219 IPR006086 GO:0004518
Cla03g01715 399 Gene3D - 10 222 - -
Cla03g01715 399 PANTHER FLAP ENDONUCLEASE 1 1 357 - -
Cla03g01715 399 CDD PIN_FEN1 4 314 - -
Cla03g01715 399 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Cla03g01715 399 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Cla03g01715 399 SMART xpgn3 1 108 IPR006085 GO:0004518
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01715 Cla-Chr3:33112090 Cla10g01374 Cla-Chr10:28782579 5.68E-10 dispersed
Cla03g01715 Cla-Chr3:33112090 Cla06g00009 Cla-Chr6:130074 3.26E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01715 K04799 - zju:107411672 660.988