Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00007 ATGGCTTTTTTGTGTTGTCATTTCTCCATTTTTCTTGTTGTTGGGCTTCTTTCAAATTCCCAGTTTTTGAGAGCTGAGCTTGATGATCAAATCACTATGTCCAACATTAGAGAGGAGCTTCAAGTGCCTGGGTGGAGCTCCAATATCTCTGAGTACTGCTCTTGGAAAGGTGTTCATTGTGGTTTGAATCACTCCATGGTTGAAACTCTTGATCTTTCTGGTCATTCTCTTAGAGGTAACCTAACTCTGATTTCTGAGCTCAAAGCTCTGAAATGGCTTGACCTATCCTACAATGACTTCCACGGCGAGATTCCATCGAGTTTTTCGAACTTACTGGAGCTGGAATTCCTTGATTTGTCTTTGAACAAGTTTGATGGTTCGATCCCGCCCGAGTTTGGTGGTCTCAAGAACCTCAAATCATTGAACCTCTCCAATAATCTTTTGGTGGGAGAAATTCCAGATGAGCTTCAAGGCTTAGGGAAGTTGCAGGATTTTCAAATTTCCAGCAACAGGTTGAGTGGTTTAATTCCAAGCTGGGTTGGAAATTTGAGTCATCTACGTGTTTTTACAGCCTATGAGAATGACTTTGGCGGTGTAATTCCTGATAATCTTGGTTCAGTTTCTGTGCTCCAAGTGTTGAATCTGCATACCAACAGGCTTGAAGGCATGATTCCCCGAAGCATTTTCACTTCGGGAAAGCTTGAGATTTTGGTTCTTACACAAAACAGATTGGCTGGCAATATTCCTGAAGAGATTGGGAACTGCAAAAGGCTTACTAGCGTTCGAATCGGGAACAATAATCTTGTTGGTGCGATTCCTCCAGCCATTGGACATGTTAGTAGCCTTGCTTACTTTGAAGTGGATAGCAATCACCTTTCAGGCAATATACCGTCTCAGTTTTCGCAGTGCTCTAATCTTACTCTGCTTAATCTAGCCTCGAATGGGTTCACTGGTGTGATTCCTCCTGAACTTGGAGAGCTGATGAATCTTCAGGAGCTTATTCTTTCTGGCAATAGCCTGTATGGTGACATTCCTAGATCGATGCTTGGATGCAAAAATCTCAACAAGCTTGATTTAAGCAGCAATAGATTTAATGGAACTATTCCTTCAGATATCTGCAATATATCAAGATTGCAGTACTTGCTTTTGGAACAGAATTCAATAAAAGGAGAGATACCCAATGAGATTGGAAAATGTACAAAGCTTCTTGACCTGCGGCTCGGTAGTAACTATCTAACTGGAAGCATCCCTTCTGAGATCGGTCGTATTAAGAACTTACAGATAGCTTTGAACTTGAGCTTCAACCATCTAAATGGACCTGTGCCTCCTGAGTTGGGGAAACTTGATAAACTGGTTTCTTTAGATTTATCGAACAATCATCTCTCGGGCGATATCCCTTCTGAGCTCAAGGGCATGTTAAGCTTGATAGAGGTGAATTTTTCAAATAATCTGCTTACTGGTTCAATTCCATTTTTTGTTCCATTCCAGAAAAGTGCAAACTCCAGCTTTCTGGGGAACGAAGGCCTTTGCGGGGTGCCACTAAGCATTTCGTGTAAGAATTCGATTGGTTCAGACAATCAAGATTACCATCACAAGGTCTCATACAAGATCATCCTGGCTGTCATCGGTTCCGGGCTAGCAGTTTTTGTATCGGTTACTATAGTTGTTTTACTTTTTGTGATGAAAGAAAAGCAGGAGAAAGCAGCAAAATCTTCAGGGACCACAGATGATGAAACTATCAACGATCAACCACCAATAATAGCAGGAAATGTCTTCGATGACAATCTCCGACAGGAAATAGATCTTGATACAGTCGTGAAAGCAACTTTGAAGGACTCAAACAAGCTCATCTTTGGCACTTTTAGTAGTGTTTATAAGGCAGTTATGCCTTCGGGTATGATCGTATCAGTTAAGAGACTAAAATCCATGGATAAGACTATCATTCATCATCAAAGCAAGATGATTAGAGAGCTTGAAAGGCTTGGCAAACTGAGTCATGCTAATCTTTTGCAACTCATTGGATATGTAATATATGAAGATGTGGCTCTGTTGCTTCACAAGTACTTACCCAATGGAACATTGGCTCAGCTTCTTCATGAATCCACAAAGAAACCTGAATATGAACCTGATTGGCCCACAAGATTTTCTATTGCCATTGGAGCAGCAGAAGGGCTTGCTTTCCTTCATCATGTGGCCATAATCCATCTTGATATCTCATCATCTAATGTTCTTTTAGATGCTAACTTCAAACCTTTGGTTGGAGAAGTTGAGATCTCAAAACTTTTAGATCCATCAAGAGGAACTGCAAGTATTAGTGCAGTGGCAGGTTCATTTGGCTACATTCCACCAGGGACCACAGATGATGAAACTATCAACGATCAACCACCAATAATAGCAGGAAATGTCTTCGATGACAATCTCCGACAGGAAATAGATCTTGATACAGTCGTGAAAGCAACTTTGAAGGACTCAAACAAGCTCATCTTTGGCACTTTTAGTAGTGTTTATAAGGCAGTTATGCCTTCGGGTATGATCGTATCAGTTAAGAGACTAAAATCCATGGATAAGACTATCATTCATCATCAAAGCAAGATGATTAGAGAGCTTGAAAGGCTTGGCAAACTGAGTCATGCTAATCTTTTGCAACTCATTGGATATGTAATATATGAAGATGTGGCTCTGTTGCTTCACAAGTACTTACCCAATGGAACATTGGCTCAGCTTCTTCATGAATCCACAAAGAAACCTGAATATGAACCTGATTGGCCCACAAGATTTTCTATTGCCATTGGAGCAGCAGAAGGGCTTGCTTTCCTTCATCATGTGGCCATAATCCATCTTGATATCTCATCATCTAATGTTCTTTTAGATGCTAACTTCAAACCTTTGGTTGGAGAAGTTGAGATCTCAAAACTTTTAGATCCATCAAGAGGAACTGCAAGTATTAGTGCAGTGGCAGGTTCATTTGGCTACATTCCACCAGAATATGCATATACAATGCAAGTTACGGCCCCGGGAAATGTTTATAGCTACGGTGTCATCTTGCTTGAGATCCTCACTACCAGATTGCCAGTTGATGAGGAGTTTGGTGAAGGAGTAGACTTGGTGAAATGGGTGCATAGTGCTCCTTCGAGGGGTGAAACACCTGAACAGATACTCGATTCCCGGCTGAGCACGGTGTCATTTGGCTGGAGGAAGGAGATGCTTGCAGCTCTCAAGATTGCATTGCTCTGCACTGACAGCATACCAGCCAAAAGGCCTAAAATGAAGAAGGTGGTGGAAATGCTTCTGGAGATCAAGCAAAATTGA 3309 41.43 MAFLCCHFSIFLVVGLLSNSQFLRAELDDQITMSNIREELQVPGWSSNISEYCSWKGVHCGLNHSMVETLDLSGHSLRGNLTLISELKALKWLDLSYNDFHGEIPSSFSNLLELEFLDLSLNKFDGSIPPEFGGLKNLKSLNLSNNLLVGEIPDELQGLGKLQDFQISSNRLSGLIPSWVGNLSHLRVFTAYENDFGGVIPDNLGSVSVLQVLNLHTNRLEGMIPRSIFTSGKLEILVLTQNRLAGNIPEEIGNCKRLTSVRIGNNNLVGAIPPAIGHVSSLAYFEVDSNHLSGNIPSQFSQCSNLTLLNLASNGFTGVIPPELGELMNLQELILSGNSLYGDIPRSMLGCKNLNKLDLSSNRFNGTIPSDICNISRLQYLLLEQNSIKGEIPNEIGKCTKLLDLRLGSNYLTGSIPSEIGRIKNLQIALNLSFNHLNGPVPPELGKLDKLVSLDLSNNHLSGDIPSELKGMLSLIEVNFSNNLLTGSIPFFVPFQKSANSSFLGNEGLCGVPLSISCKNSIGSDNQDYHHKVSYKIILAVIGSGLAVFVSVTIVVLLFVMKEKQEKAAKSSGTTDDETINDQPPIIAGNVFDDNLRQEIDLDTVVKATLKDSNKLIFGTFSSVYKAVMPSGMIVSVKRLKSMDKTIIHHQSKMIRELERLGKLSHANLLQLIGYVIYEDVALLLHKYLPNGTLAQLLHESTKKPEYEPDWPTRFSIAIGAAEGLAFLHHVAIIHLDISSSNVLLDANFKPLVGEVEISKLLDPSRGTASISAVAGSFGYIPPGTTDDETINDQPPIIAGNVFDDNLRQEIDLDTVVKATLKDSNKLIFGTFSSVYKAVMPSGMIVSVKRLKSMDKTIIHHQSKMIRELERLGKLSHANLLQLIGYVIYEDVALLLHKYLPNGTLAQLLHESTKKPEYEPDWPTRFSIAIGAAEGLAFLHHVAIIHLDISSSNVLLDANFKPLVGEVEISKLLDPSRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVILLEILTTRLPVDEEFGEGVDLVKWVHSAPSRGETPEQILDSRLSTVSFGWRKEMLAALKIALLCTDSIPAKRPKMKKVVEMLLEIKQN 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 195927 201606 - ClCG04G000070.1 Cla04g00007 270235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00007 1102 SUPERFAMILY L domain-like 254 515 - -
Cla04g00007 1102 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 8 784 - -
Cla04g00007 1102 ProSitePatterns Tyrosine protein kinases specific active-site signature. 733 745 IPR008266 GO:0004672|GO:0006468
Cla04g00007 1102 Gene3D Ribonuclease Inhibitor 275 526 IPR032675 -
Cla04g00007 1102 Gene3D Transferase(Phosphotransferase) domain 1 594 793 - -
Cla04g00007 1102 ProSiteProfiles Protein kinase domain profile. 610 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00007 1102 SUPERFAMILY Protein kinase-like (PK-like) 611 785 IPR011009 -
Cla04g00007 1102 SMART LRR_typ_2 327 351 IPR003591 -
Cla04g00007 1102 SMART LRR_typ_2 159 182 IPR003591 -
Cla04g00007 1102 SMART LRR_typ_2 375 399 IPR003591 -
Cla04g00007 1102 SMART LRR_typ_2 448 471 IPR003591 -
Cla04g00007 1102 SMART LRR_typ_2 207 231 IPR003591 -
Cla04g00007 1102 SMART LRR_typ_2 111 134 IPR003591 -
Cla04g00007 1102 SMART LRR_typ_2 87 110 IPR003591 -
Cla04g00007 1102 SMART LRR_typ_2 135 158 IPR003591 -
Cla04g00007 1102 Pfam Protein kinase domain 614 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00007 1102 Pfam Protein kinase domain 825 1031 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00007 1102 ProSiteProfiles Protein kinase domain profile. 821 1102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00007 1102 Pfam Leucine Rich Repeat 450 471 IPR001611 GO:0005515
Cla04g00007 1102 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 787 1100 - -
Cla04g00007 1102 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 784 - -
Cla04g00007 1102 ProSitePatterns Tyrosine protein kinases specific active-site signature. 944 956 IPR008266 GO:0004672|GO:0006468
Cla04g00007 1102 Gene3D Transferase(Phosphotransferase) domain 1 900 1102 - -
Cla04g00007 1102 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 787 1100 - -
Cla04g00007 1102 Gene3D Ribonuclease Inhibitor 27 176 IPR032675 -
Cla04g00007 1102 CDD STKc_IRAK 830 1099 - -
Cla04g00007 1102 Gene3D Ribonuclease Inhibitor 177 274 IPR032675 -
Cla04g00007 1102 SUPERFAMILY L domain-like 43 303 - -
Cla04g00007 1102 Gene3D Phosphorylase Kinase; domain 1 794 899 - -
Cla04g00007 1102 Pfam Leucine rich repeat 89 148 IPR001611 GO:0005515
Cla04g00007 1102 Pfam Leucine rich repeat 329 388 IPR001611 GO:0005515
Cla04g00007 1102 SUPERFAMILY Protein kinase-like (PK-like) 821 1097 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00956 Cla-Chr3:16487704 Cla04g00007 Cla-Chr4:195927 8.25E-07 dispersed
Cla04g00007 Cla-Chr4:195927 Cla05g00378 Cla-Chr5:3458421 3.25E-58 dispersed
Cla04g00007 Cla-Chr4:195927 Cla05g00374 Cla-Chr5:3422514 4.21E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80464 PF00069 Pkinase 5.20E-27 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00007 - - csv:101215786 1415.21