Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00044 ATGCCCCCATTTCTCTTCTTCTTCCTACTCACCTTCTCCTTGTTCGTTTCTTTTACTTCCTCTCTCAACTCCGATGGCCTCTCCCTCCTCGCCCTCAAGGCCGCCATTGAATCCGACCCATCTCACATCCTCGAGTCTTGGTCCGAGTTCGACTCCACCCCATGCCACTGGCCAGGAATCGTCTGCACTCGCGACCGAGTCACTCAGCTCTCTCTCCCCAACAAAGGCCTCACCGGCTACATCCCTTCCGAACTCGGCCTCCTCGATTCCCTCCGCCGCCTCACTCTCGCCTTCAACAATTTCTCTAAACCCATTCCTTCTCATCTCTACAACGCTACAAATCTCGTCGTTCTAGACCTTTCCCACAACTCTCTCTCTGGTTCACTGTCTGATCAAATCGGCGATCTGAAGAAGCTTCGGCATCTCGATTTATCCTCAAATGCCCTCAATGGCTCTCTCCCTAATCGCCTCACTGACCTAACCGAACTCGTCGGGACTCTCAATTTGTCCTACAATCGATTCTCCGGCGAGGTTCCGCCTTCCTTCGGCAACCTCCCGCTGATCGTGAATCTAGACGTCCGTCACAACAATCTCACCGGAAAAATCCCTCAAGTGGGTTCGCTGTTGAATCAAGGCCCAACGGCGTTCTCCGGAAACCCGAGTCTGTGTGGGTTTCCGTTACAGACGCCATGTCCGGAAGCACAGAATCCGAATGCCTTTCCTGAGAATCCGCAGAATCCCAAGTCACTGAACCCGAACTTCCCGGGCTACGGCGGCCGGAGAGAGAGTACCGGCGGTGGGGTGGCCGGGTCGGCGGCGGTGGCAGTGGTGTCGTCGATATTCGCAGTTGTGGGGGCTGTGTCGCTGACGGTGTGGTGGTTCCGGAGGAAGGCGGTAGTGGGGAGGCTGGAAGAGGGCAAAACTGGAAAGGGTAGTCCGGAAGGGGAAAGTTGCGGGGAGTTGGAAGGGCAAGATGGTAAATTCGTGGTGATGGATGAAGGGATGAATTTGGAATTAGAGGATTTGTTGAGGGCATCGGCGTACGTGGTGGGGAAGAGTAGGAGTGGGATAGTGTACAAAGTAGTGGCGGGGAGAGGATCCAGTGCGGGCGCGAGTATTGTAGCTGTAAGGAGACTTAACGATGGTGATGCCACGTTGACGTTTAAGGATTTTGAGAATGAGATCGAGGCCATTGGTAGGGTTCAGCATCCCAACATCGTACGGTTGAGAGCTTATTACTATGCAACTGACGAGAAATTGCTGGTTACTGATTTCATCAAGAATGGAAGCTTGCACACCGCCCTACATGGAAGTCCCTCCAGTTGTTTGTCACCTCTGCCATGGTCTGCCAGGTTAAAAATTGCCCAAGGAGCTGCAAGGGGTTTGGCATACATTCATGAATTTGGTGCTCGGAAATACGTACATGGAAACATCAAAGCGACGAAAATCCTTGTGGATGAGGATTTCGAGGCTTACATTTCAGGTTTTGGACTAGGTCGACTTGGCCAAGGAGCACCTAAGTTGACTGCAACTTCGTCCAAGAAGTTGAGCTCAAATCAGAATATAATAAGCTCAATGATGGGGCCAAGCATTTCAAGTCCCTCAGTGATGTACTTGGCGCCGGAGGTACGGGAGTTTGGAGGGAAGTACACGCAGAAATGTGACGTGTACTCGTTCGGGATGGTGCTTCTACAACTTTTGAGCGGTAGATTGGAAAATGATGGGAAGGGGTTGGAATGGTTGGTGAGAAAGGCATTTGAAGAAGAGCGGCCATTGACAGAGGTTATAGACCCTGCGCTTGTGCCTGAGATTTATGCCAAGAAACAAGTGGTTTCCATGTTTCACATTGCACTGAATTGCACAGAGCTTGACCCCGAGCTGCGTCCCAGAATGAGAACGGTGTCGGAGAGTCTGGATCGAATCAAATCTGAGTGA 1935 51.89 MPPFLFFFLLTFSLFVSFTSSLNSDGLSLLALKAAIESDPSHILESWSEFDSTPCHWPGIVCTRDRVTQLSLPNKGLTGYIPSELGLLDSLRRLTLAFNNFSKPIPSHLYNATNLVVLDLSHNSLSGSLSDQIGDLKKLRHLDLSSNALNGSLPNRLTDLTELVGTLNLSYNRFSGEVPPSFGNLPLIVNLDVRHNNLTGKIPQVGSLLNQGPTAFSGNPSLCGFPLQTPCPEAQNPNAFPENPQNPKSLNPNFPGYGGRRESTGGGVAGSAAVAVVSSIFAVVGAVSLTVWWFRRKAVVGRLEEGKTGKGSPEGESCGELEGQDGKFVVMDEGMNLELEDLLRASAYVVGKSRSGIVYKVVAGRGSSAGASIVAVRRLNDGDATLTFKDFENEIEAIGRVQHPNIVRLRAYYYATDEKLLVTDFIKNGSLHTALHGSPSSCLSPLPWSARLKIAQGAARGLAYIHEFGARKYVHGNIKATKILVDEDFEAYISGFGLGRLGQGAPKLTATSSKKLSSNQNIISSMMGPSISSPSVMYLAPEVREFGGKYTQKCDVYSFGMVLLQLLSGRLENDGKGLEWLVRKAFEEERPLTEVIDPALVPEIYAKKQVVSMFHIALNCTELDPELRPRMRTVSESLDRIKSE 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1331851 1340230 - ClCG04G000380.1 Cla04g00044 270272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00044 644 Pfam Leucine rich repeat 90 149 IPR001611 GO:0005515
Cla04g00044 644 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 8 643 - -
Cla04g00044 644 SUPERFAMILY Protein kinase-like (PK-like) 349 639 IPR011009 -
Cla04g00044 644 Gene3D Transferase(Phosphotransferase) domain 1 426 644 - -
Cla04g00044 644 Gene3D Ribonuclease Inhibitor 22 164 IPR032675 -
Cla04g00044 644 Gene3D Ribonuclease Inhibitor 165 233 IPR032675 -
Cla04g00044 644 ProSiteProfiles Protein kinase domain profile. 344 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00044 644 Pfam Protein tyrosine and serine/threonine kinase 350 638 IPR001245 GO:0004672|GO:0006468
Cla04g00044 644 PRINTS Leucine-rich repeat signature 115 128 - -
Cla04g00044 644 PRINTS Leucine-rich repeat signature 136 149 - -
Cla04g00044 644 MobiDBLite consensus disorder prediction 239 262 - -
Cla04g00044 644 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 8 643 - -
Cla04g00044 644 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Cla04g00044 644 SUPERFAMILY L domain-like 24 228 - -
Cla04g00044 644 Gene3D Phosphorylase Kinase; domain 1 326 425 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00044 Cla-Chr4:1331851 Cla11g01352 Cla-Chr11:26999967 1.61E-170 dispersed
Cla04g00044 Cla-Chr4:1331851 Cla01g00577 Cla-Chr1:6507054 8.73E-142 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80465 PF07714 PK_Tyr_Ser-Thr 6.70E-26 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00044 - - bhj:120074581 1118.22