Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla04g00062 | ATGGCTTCCCCCTTCAAACCTCCATTGTTGCTCTTTTTGTCCTTCGCTTTCTTCATTTTGGGTTCTAGTTCATCTGAGGAATCGACCCTTTTGACCTTCAAAGCCTCCATTAAAGATTCAACAAACTCTCTCTCCAACTGGGTTTCTTCTTCTCAGACCCATTTCTGTAATTGGACTGGAATTTCTTGTGCCAACTCTTCTCCTTCTTTGCTTTCGGTTTCCGCCATTGATCTTCAGGGTTTGAACCTTTCTGGGGAAATTTCATCTTCTCTTTGTGAACTCCCTCGTTTGGCCCATCTTAATCTTGCGGATAATCGGTTTAATCAGCCGATTCCTCTTCATCTCTCGCAGTGCAGCTCGTTGGAGACTTTGAATCTGAGTAATAATCTTATTTGGGGAACGATCCCAGATCAGATTTCTCTGTTTGGTTCTTTGCGAGTGCTTGATTTAGGGAAGAATCACATTGAAGGGAAGATTCCTGAGGGCATTGGGGCTTTGAATAATCTACAAATTCTCAATTTCAGAAGCAACTTGATTTCTGGTACAGTTCCTTCTGTTGTCTTTCATAATCTGACTGAACTTCTTGTTGTTGATTTGTCTGAAAATTCTTATCTGTTGAGTGATATTCCTAGTGAGATTGGGAAGCTTGATAAACTTGAGGAGTTATTGCTTCACAGCTCTGGTTTCTATGGTGAAATCCCTTCTTCTTTGTTGGGTTTGAGAAGTTTGAGTGTTTTGGATCTTTCACAGAACAATCTCACTGGGAAACTCCCTGAAATGTTGGGTTCTTCTTTGAAGAATTTGGTGTCTTTCGATGTTTCTGAGAATAAGCTTGTGGGGTCTTTCCCAAATGGGTTTTGTAGTGGAAAAGGCCTTGTGAGTCTTAGTGTTCATACCAATTTTTTCACTGGGAGTTTGCCTAATTCCTTGAACCAGTGCTTGAATCTTGAGAGGTTTCAAGTTCAGAACAACGGGTTTTCTGGGGATTTTCCTAAAGCTTTGTGGTCATTGCCTAAGATTAAGCTCATCAGAGCTGAAAACAATGGTTTCTCTGGTGAAATTCCAGAGTCTATATCTATGGCTGCTCAGCTTGAGCAAGTTCAGCTTGATAACAACAGTTTTTCAAGTAAAATACCTCGGGGTCTCGGGTCTATTCGAAGCTTATATCGATTCTCTGTGTCGCTCAATCGCTTTTATGGCGAATTGCCACCAAACTTCTGTGATTCACCATTAATGAGTATAATCAATTTGTCACACAATTCTCTTTCCGGTCGAATTCCCGAGCCGAAAAACTGCAAGAAACTGGTCTCTTTGTCCTTAGCAGGCAATAGTCTTACTGGAGGAATTCCTACTTCCCTTGCAGATCTACCTGTGTTAACTTATCTTGATCTTTCTGATAACAATCTCACTGGTTCGATCCCTCAAGGACTTGAAAACCTAAAGCTTGCACTCTTTAATGTTTCGTTCAATCAACTATCGGGCGCTGTTCCCTTCTCTTTGATTTCGGGGCTACCAGCTTCATTCCTGCAAGGAAATCCTGATCTTTGTGGCCCTGGTTTGCAAACTCCTTGTTCTCAGGGCCATCCAACAAACCATATGTATAGACTTAACAAAATGACATGTGCCCTCATCTCTCTAGCTTGTGTTTTAGGAGTTCTGAGTTTAGCTGCTGGGTTCATTCTGTATTATCGATCCTACAAACCGAAATCCCGAATCGATAACTGGCATTCGGTCTACTTCTATCCTCTTAGAATCAGCGAGCATGAGTTGATCATGGGGATGAATGAGAAAACTGCACAAGGATGTGGAGGAGCTTTTGGCCAAGTGTTCATTTTAAGCTTACCAAGCCGTGAACTGATTGCCGTAAAGAAACTCGTTAATTTTGGGAGTCGTTCATGGAAGTCGTTGAAAGCTGAGGTCAAGACATTGGCCAAGATCAGGCACAAAAACATCATCAAAATTCTTGGGTTTTGCCATTCTGATGATGCCATTTTTCTGATTTATGAATTCTTACACAAAGGAAGCTTGGCTGACTTGATATGCAGAAATGACTCTTGTCTCAATTGGAATGTGAGACTGAGAATTGCCATTGAGGTTGCTCAAGGACTAGCTTACATTCACAATGACTATGTCCCACATTTACTTCATCGAAATGTCAAATCGTCCAACATTCTATTGGACGCCGACTTTGTCCCAAAGCTCATGGATTTTGCTCTTCACCATATCATTGGAGAGTCGGCATTTCAGTCGACAGTAGCTTCGGAATCTTCTCATTCCTGCTACATTGCACCAGAATATAAATACAACAAAAAGGCAACAGAGCAAATGGATGTGTACAGCTTTGGTGTAGTGTTGTTAGAGCTGGTGACTGGTAGACAAGCTGAGCGCTCAGAATCAATGGACTCTCTCGACGTCGTCCAGTGGGTGAGAAGGAAGGTGAACATAGCCAATGGAGCTCCCCAAGTCTTGGACTCGAGCATCTCGGAACATTGTCAACGACAAATGCTGGAAGCTCTAGACATTGCCCTCCAATGCACTTCTATAATGCCTGAAAAACGACCGTCGATGCTCGAAGTTGTCAAGGCCCTTCAATTGGTTGGATCAACGACAAACCTTCACGATGCAGCCTTCTCGGTTGCAGAGGATAGTTCGGTTTCAAGCAAAAGACCTCCTCTTGCTCCATGA | 2685 | 42.5 | MASPFKPPLLLFLSFAFFILGSSSSEESTLLTFKASIKDSTNSLSNWVSSSQTHFCNWTGISCANSSPSLLSVSAIDLQGLNLSGEISSSLCELPRLAHLNLADNRFNQPIPLHLSQCSSLETLNLSNNLIWGTIPDQISLFGSLRVLDLGKNHIEGKIPEGIGALNNLQILNFRSNLISGTVPSVVFHNLTELLVVDLSENSYLLSDIPSEIGKLDKLEELLLHSSGFYGEIPSSLLGLRSLSVLDLSQNNLTGKLPEMLGSSLKNLVSFDVSENKLVGSFPNGFCSGKGLVSLSVHTNFFTGSLPNSLNQCLNLERFQVQNNGFSGDFPKALWSLPKIKLIRAENNGFSGEIPESISMAAQLEQVQLDNNSFSSKIPRGLGSIRSLYRFSVSLNRFYGELPPNFCDSPLMSIINLSHNSLSGRIPEPKNCKKLVSLSLAGNSLTGGIPTSLADLPVLTYLDLSDNNLTGSIPQGLENLKLALFNVSFNQLSGAVPFSLISGLPASFLQGNPDLCGPGLQTPCSQGHPTNHMYRLNKMTCALISLACVLGVLSLAAGFILYYRSYKPKSRIDNWHSVYFYPLRISEHELIMGMNEKTAQGCGGAFGQVFILSLPSRELIAVKKLVNFGSRSWKSLKAEVKTLAKIRHKNIIKILGFCHSDDAIFLIYEFLHKGSLADLICRNDSCLNWNVRLRIAIEVAQGLAYIHNDYVPHLLHRNVKSSNILLDADFVPKLMDFALHHIIGESAFQSTVASESSHSCYIAPEYKYNKKATEQMDVYSFGVVLLELVTGRQAERSESMDSLDVVQWVRRKVNIANGAPQVLDSSISEHCQRQMLEALDIALQCTSIMPEKRPSMLEVVKALQLVGSTTNLHDAAFSVAEDSSVSSKRPPLAP | 894 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2025430 | 2029211 | - | ClCG04G000560.1 | Cla04g00062 | 270290 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla04g00062 | 894 | PANTHER | OSJNBB0022F23.6 PROTEIN | 8 | 873 | - | - | |
Cla04g00062 | 894 | Pfam | Protein tyrosine and serine/threonine kinase | 604 | 863 | IPR001245 | GO:0004672|GO:0006468 | |
Cla04g00062 | 894 | Gene3D | Transferase(Phosphotransferase) domain 1 | 672 | 883 | - | - | |
Cla04g00062 | 894 | SUPERFAMILY | L domain-like | 204 | 531 | - | - | |
Cla04g00062 | 894 | Pfam | Leucine rich repeat N-terminal domain | 25 | 63 | IPR013210 | - | |
Cla04g00062 | 894 | SUPERFAMILY | L domain-like | 24 | 288 | - | - | |
Cla04g00062 | 894 | ProSiteProfiles | Protein kinase domain profile. | 595 | 866 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla04g00062 | 894 | Gene3D | Ribonuclease Inhibitor | 188 | 263 | IPR032675 | - | |
Cla04g00062 | 894 | Gene3D | Ribonuclease Inhibitor | 264 | 527 | IPR032675 | - | |
Cla04g00062 | 894 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED | 8 | 873 | - | - | |
Cla04g00062 | 894 | Gene3D | Phosphorylase Kinase; domain 1 | 602 | 671 | - | - | |
Cla04g00062 | 894 | ProSiteProfiles | Leucine-rich repeat profile. | 120 | 142 | IPR001611 | GO:0005515 | |
Cla04g00062 | 894 | Gene3D | Ribonuclease Inhibitor | 23 | 187 | IPR032675 | - | |
Cla04g00062 | 894 | ProSiteProfiles | Leucine-rich repeat profile. | 458 | 481 | IPR001611 | GO:0005515 | |
Cla04g00062 | 894 | SUPERFAMILY | Protein kinase-like (PK-like) | 604 | 870 | IPR011009 | - | |
Cla04g00062 | 894 | SMART | LRR_typ_2 | 191 | 216 | IPR003591 | - | |
Cla04g00062 | 894 | SMART | LRR_typ_2 | 166 | 190 | IPR003591 | - | |
Cla04g00062 | 894 | SMART | LRR_typ_2 | 94 | 118 | IPR003591 | - | |
Cla04g00062 | 894 | SMART | LRR_typ_2 | 240 | 264 | IPR003591 | - | |
Cla04g00062 | 894 | SMART | LRR_typ_2 | 142 | 165 | IPR003591 | - | |
Cla04g00062 | 894 | SMART | LRR_typ_2 | 456 | 480 | IPR003591 | - | |
Cla04g00062 | 894 | SMART | LRR_typ_2 | 265 | 289 | IPR003591 | - | |
Cla04g00062 | 894 | Pfam | Leucine rich repeat | 120 | 179 | IPR001611 | GO:0005515 | |
Cla04g00062 | 894 | Pfam | Leucine rich repeat | 434 | 492 | IPR001611 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla04g00062 | Cla-Chr4:2025430 | Cla10g00776 | Cla-Chr10:14753611 | 4.60E-148 | dispersed | |
Cla04g00061 | Cla-Chr4:2014398 | Cla04g00062 | Cla-Chr4:2025430 | 0 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80467 | PF07714 | PK_Tyr_Ser-Thr | 3.80E-38 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla04g00062 | - | - | csv:101222175 | 1603.96 |