Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00062 ATGGCTTCCCCCTTCAAACCTCCATTGTTGCTCTTTTTGTCCTTCGCTTTCTTCATTTTGGGTTCTAGTTCATCTGAGGAATCGACCCTTTTGACCTTCAAAGCCTCCATTAAAGATTCAACAAACTCTCTCTCCAACTGGGTTTCTTCTTCTCAGACCCATTTCTGTAATTGGACTGGAATTTCTTGTGCCAACTCTTCTCCTTCTTTGCTTTCGGTTTCCGCCATTGATCTTCAGGGTTTGAACCTTTCTGGGGAAATTTCATCTTCTCTTTGTGAACTCCCTCGTTTGGCCCATCTTAATCTTGCGGATAATCGGTTTAATCAGCCGATTCCTCTTCATCTCTCGCAGTGCAGCTCGTTGGAGACTTTGAATCTGAGTAATAATCTTATTTGGGGAACGATCCCAGATCAGATTTCTCTGTTTGGTTCTTTGCGAGTGCTTGATTTAGGGAAGAATCACATTGAAGGGAAGATTCCTGAGGGCATTGGGGCTTTGAATAATCTACAAATTCTCAATTTCAGAAGCAACTTGATTTCTGGTACAGTTCCTTCTGTTGTCTTTCATAATCTGACTGAACTTCTTGTTGTTGATTTGTCTGAAAATTCTTATCTGTTGAGTGATATTCCTAGTGAGATTGGGAAGCTTGATAAACTTGAGGAGTTATTGCTTCACAGCTCTGGTTTCTATGGTGAAATCCCTTCTTCTTTGTTGGGTTTGAGAAGTTTGAGTGTTTTGGATCTTTCACAGAACAATCTCACTGGGAAACTCCCTGAAATGTTGGGTTCTTCTTTGAAGAATTTGGTGTCTTTCGATGTTTCTGAGAATAAGCTTGTGGGGTCTTTCCCAAATGGGTTTTGTAGTGGAAAAGGCCTTGTGAGTCTTAGTGTTCATACCAATTTTTTCACTGGGAGTTTGCCTAATTCCTTGAACCAGTGCTTGAATCTTGAGAGGTTTCAAGTTCAGAACAACGGGTTTTCTGGGGATTTTCCTAAAGCTTTGTGGTCATTGCCTAAGATTAAGCTCATCAGAGCTGAAAACAATGGTTTCTCTGGTGAAATTCCAGAGTCTATATCTATGGCTGCTCAGCTTGAGCAAGTTCAGCTTGATAACAACAGTTTTTCAAGTAAAATACCTCGGGGTCTCGGGTCTATTCGAAGCTTATATCGATTCTCTGTGTCGCTCAATCGCTTTTATGGCGAATTGCCACCAAACTTCTGTGATTCACCATTAATGAGTATAATCAATTTGTCACACAATTCTCTTTCCGGTCGAATTCCCGAGCCGAAAAACTGCAAGAAACTGGTCTCTTTGTCCTTAGCAGGCAATAGTCTTACTGGAGGAATTCCTACTTCCCTTGCAGATCTACCTGTGTTAACTTATCTTGATCTTTCTGATAACAATCTCACTGGTTCGATCCCTCAAGGACTTGAAAACCTAAAGCTTGCACTCTTTAATGTTTCGTTCAATCAACTATCGGGCGCTGTTCCCTTCTCTTTGATTTCGGGGCTACCAGCTTCATTCCTGCAAGGAAATCCTGATCTTTGTGGCCCTGGTTTGCAAACTCCTTGTTCTCAGGGCCATCCAACAAACCATATGTATAGACTTAACAAAATGACATGTGCCCTCATCTCTCTAGCTTGTGTTTTAGGAGTTCTGAGTTTAGCTGCTGGGTTCATTCTGTATTATCGATCCTACAAACCGAAATCCCGAATCGATAACTGGCATTCGGTCTACTTCTATCCTCTTAGAATCAGCGAGCATGAGTTGATCATGGGGATGAATGAGAAAACTGCACAAGGATGTGGAGGAGCTTTTGGCCAAGTGTTCATTTTAAGCTTACCAAGCCGTGAACTGATTGCCGTAAAGAAACTCGTTAATTTTGGGAGTCGTTCATGGAAGTCGTTGAAAGCTGAGGTCAAGACATTGGCCAAGATCAGGCACAAAAACATCATCAAAATTCTTGGGTTTTGCCATTCTGATGATGCCATTTTTCTGATTTATGAATTCTTACACAAAGGAAGCTTGGCTGACTTGATATGCAGAAATGACTCTTGTCTCAATTGGAATGTGAGACTGAGAATTGCCATTGAGGTTGCTCAAGGACTAGCTTACATTCACAATGACTATGTCCCACATTTACTTCATCGAAATGTCAAATCGTCCAACATTCTATTGGACGCCGACTTTGTCCCAAAGCTCATGGATTTTGCTCTTCACCATATCATTGGAGAGTCGGCATTTCAGTCGACAGTAGCTTCGGAATCTTCTCATTCCTGCTACATTGCACCAGAATATAAATACAACAAAAAGGCAACAGAGCAAATGGATGTGTACAGCTTTGGTGTAGTGTTGTTAGAGCTGGTGACTGGTAGACAAGCTGAGCGCTCAGAATCAATGGACTCTCTCGACGTCGTCCAGTGGGTGAGAAGGAAGGTGAACATAGCCAATGGAGCTCCCCAAGTCTTGGACTCGAGCATCTCGGAACATTGTCAACGACAAATGCTGGAAGCTCTAGACATTGCCCTCCAATGCACTTCTATAATGCCTGAAAAACGACCGTCGATGCTCGAAGTTGTCAAGGCCCTTCAATTGGTTGGATCAACGACAAACCTTCACGATGCAGCCTTCTCGGTTGCAGAGGATAGTTCGGTTTCAAGCAAAAGACCTCCTCTTGCTCCATGA 2685 42.5 MASPFKPPLLLFLSFAFFILGSSSSEESTLLTFKASIKDSTNSLSNWVSSSQTHFCNWTGISCANSSPSLLSVSAIDLQGLNLSGEISSSLCELPRLAHLNLADNRFNQPIPLHLSQCSSLETLNLSNNLIWGTIPDQISLFGSLRVLDLGKNHIEGKIPEGIGALNNLQILNFRSNLISGTVPSVVFHNLTELLVVDLSENSYLLSDIPSEIGKLDKLEELLLHSSGFYGEIPSSLLGLRSLSVLDLSQNNLTGKLPEMLGSSLKNLVSFDVSENKLVGSFPNGFCSGKGLVSLSVHTNFFTGSLPNSLNQCLNLERFQVQNNGFSGDFPKALWSLPKIKLIRAENNGFSGEIPESISMAAQLEQVQLDNNSFSSKIPRGLGSIRSLYRFSVSLNRFYGELPPNFCDSPLMSIINLSHNSLSGRIPEPKNCKKLVSLSLAGNSLTGGIPTSLADLPVLTYLDLSDNNLTGSIPQGLENLKLALFNVSFNQLSGAVPFSLISGLPASFLQGNPDLCGPGLQTPCSQGHPTNHMYRLNKMTCALISLACVLGVLSLAAGFILYYRSYKPKSRIDNWHSVYFYPLRISEHELIMGMNEKTAQGCGGAFGQVFILSLPSRELIAVKKLVNFGSRSWKSLKAEVKTLAKIRHKNIIKILGFCHSDDAIFLIYEFLHKGSLADLICRNDSCLNWNVRLRIAIEVAQGLAYIHNDYVPHLLHRNVKSSNILLDADFVPKLMDFALHHIIGESAFQSTVASESSHSCYIAPEYKYNKKATEQMDVYSFGVVLLELVTGRQAERSESMDSLDVVQWVRRKVNIANGAPQVLDSSISEHCQRQMLEALDIALQCTSIMPEKRPSMLEVVKALQLVGSTTNLHDAAFSVAEDSSVSSKRPPLAP 894
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 2025430 2029211 - ClCG04G000560.1 Cla04g00062 270290
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00062 894 PANTHER OSJNBB0022F23.6 PROTEIN 8 873 - -
Cla04g00062 894 Pfam Protein tyrosine and serine/threonine kinase 604 863 IPR001245 GO:0004672|GO:0006468
Cla04g00062 894 Gene3D Transferase(Phosphotransferase) domain 1 672 883 - -
Cla04g00062 894 SUPERFAMILY L domain-like 204 531 - -
Cla04g00062 894 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Cla04g00062 894 SUPERFAMILY L domain-like 24 288 - -
Cla04g00062 894 ProSiteProfiles Protein kinase domain profile. 595 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00062 894 Gene3D Ribonuclease Inhibitor 188 263 IPR032675 -
Cla04g00062 894 Gene3D Ribonuclease Inhibitor 264 527 IPR032675 -
Cla04g00062 894 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 873 - -
Cla04g00062 894 Gene3D Phosphorylase Kinase; domain 1 602 671 - -
Cla04g00062 894 ProSiteProfiles Leucine-rich repeat profile. 120 142 IPR001611 GO:0005515
Cla04g00062 894 Gene3D Ribonuclease Inhibitor 23 187 IPR032675 -
Cla04g00062 894 ProSiteProfiles Leucine-rich repeat profile. 458 481 IPR001611 GO:0005515
Cla04g00062 894 SUPERFAMILY Protein kinase-like (PK-like) 604 870 IPR011009 -
Cla04g00062 894 SMART LRR_typ_2 191 216 IPR003591 -
Cla04g00062 894 SMART LRR_typ_2 166 190 IPR003591 -
Cla04g00062 894 SMART LRR_typ_2 94 118 IPR003591 -
Cla04g00062 894 SMART LRR_typ_2 240 264 IPR003591 -
Cla04g00062 894 SMART LRR_typ_2 142 165 IPR003591 -
Cla04g00062 894 SMART LRR_typ_2 456 480 IPR003591 -
Cla04g00062 894 SMART LRR_typ_2 265 289 IPR003591 -
Cla04g00062 894 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515
Cla04g00062 894 Pfam Leucine rich repeat 434 492 IPR001611 GO:0005515
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00062 Cla-Chr4:2025430 Cla10g00776 Cla-Chr10:14753611 4.60E-148 dispersed
Cla04g00061 Cla-Chr4:2014398 Cla04g00062 Cla-Chr4:2025430 0 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80467 PF07714 PK_Tyr_Ser-Thr 3.80E-38 CL0016 Cla PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00062 - - csv:101222175 1603.96