Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00085 ATGGTCCATTCTCTCTCCTCCCCATCTTCAACCATTCTCTCTCTCTCTCTCTCTTCAATTCCATCTTCTTCTTCAATTCCCATGGGAGACCCATATTCAAACTCATCAGCAAGTGTTCTAAAATTCAACTCCCTTCACCACCATTTTTCCCCATCACAACCTTCAAATTCTACCCCACACCTCAACATGTCTCACAATTGCTTCTCTTGCCCCTACTCGAACCCGCATCCGCCTCTGCCTCCATCTCCACCGCTCCGTGAGGCTCTGCCGCTTCTCGGGCTGATGTCTCCGCCCGAGCAGCGGCAGGAGCAAGAAGAAGAAGACGATGGCGGAGGCGGGAGAGATGAGGAGGAATCGGTGACGGTGGCGTTGCACATAGGGCTACCGAGCCCTAGCGCGGCAGAGATAGCATCTTTGATGTGTGGTTCTTCATCTGAGATTGATCATGTTGGTGATGGAGATCATAGCAATAGTAATAATAATAATCAAGATCATGATTTAGGGCAGTCCACCAAAACCCTAATAAAGGGGCAGTATTGGATCCCTACTCCTTCTCAAATTCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGCCCAGAGTCCCTCCGAGGCACGCAGCCAACGGGAATGCTACGACTTCCATGTTACTGCTGTGCACCGGGGTGTCGCAACAACATAGACCACCCTCGAGCCAAACCCTTGAAGGACTTCAGAACCCTGCAAACGCATTACAAGCGCAAGCATGGCCTGAAGCCCTTCATGTGTCGAAAGTGCGGTAAGGCGTTTGCCGTGCGCGGGGACTGGCGGACGCACGAGAAGAATTGTGGCAAGCTTTGGTACTGCATTTGTGGCTCGGATTTCAAACACAAGCGCTCTTTGAAGGACCATGTCAAGGCCTTCGGTAACGACCACGCCGCCTATGGTGGGGGCGGGATCGATGGGTTCGGAGACGAGGAAGATGAGCCTGCTTCAGAAGTCGAGCAGGATAATGATGAGTGA 1074 51.21 MVHSLSSPSSTILSLSLSSIPSSSSIPMGDPYSNSSASVLKFNSLHHHFSPSQPSNSTPHLNMSHNCFSCPYSNPHPPLPPSPPLREALPLLGLMSPPEQRQEQEEEDDGGGGRDEEESVTVALHIGLPSPSAAEIASLMCGSSSEIDHVGDGDHSNSNNNNQDHDLGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGGGGIDGFGDEEDEPASEVEQDNDE 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2589146 2592355 - ClCG04G000780.2 Cla04g00085 270313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00085 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 278 298 IPR013087 -
Cla04g00085 357 MobiDBLite consensus disorder prediction 335 357 - -
Cla04g00085 357 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 38 356 - -
Cla04g00085 357 SMART c2h2final6 194 216 IPR013087 -
Cla04g00085 357 SMART c2h2final6 278 298 IPR013087 -
Cla04g00085 357 SUPERFAMILY beta-beta-alpha zinc fingers 190 216 IPR036236 -
Cla04g00085 357 ProSitePatterns Zinc finger C2H2 type domain signature. 196 216 IPR013087 -
Cla04g00085 357 SUPERFAMILY beta-beta-alpha zinc fingers 263 298 IPR036236 -
Cla04g00085 357 Gene3D Classic Zinc Finger 256 331 - -
Cla04g00085 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 221 IPR013087 -
Cla04g00085 357 PANTHER ZINC FINGER PROTEIN WIP2 38 356 IPR043584 GO:0003700|GO:0010468
Cla04g00085 357 Gene3D Classic Zinc Finger 193 216 - -
Cla04g00085 357 MobiDBLite consensus disorder prediction 145 168 - -
Cla04g00085 357 MobiDBLite consensus disorder prediction 154 168 - -
Cla04g00085 357 MobiDBLite consensus disorder prediction 97 118 - -
Cla04g00085 357 MobiDBLite consensus disorder prediction 339 357 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00085 Cla10g01505 CCT
Cla04g00085 Cla10g01505 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01224 Cla-Chr1:23131996 Cla04g00085 Cla-Chr4:2589146 2.13E-102 dispersed
Cla03g00953 Cla-Chr3:16231739 Cla04g00085 Cla-Chr4:2589146 2.12E-100 dispersed
Cla04g00085 Cla-Chr4:2589146 Cla10g01643 Cla-Chr10:32073533 1.06E-121 dispersed
Cla04g00085 Cla-Chr4:2589146 Cla02g02261 Cla-Chr2:37716394 1.63E-121 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60875 None None None None Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00085 - - bhj:120074233 587.03