Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00105 ATGGCTCCAGGAAGCAGTACCTGCAAAGAAGTTGTTGATTCTCATCCTTCAGTTTCAGGTCATGACATAGCAATGTCTAAATCAGAGAATATTTCTACATCCTCAAAAGGCCCACTTGGTTTGAGTGGGAAAATTGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTTGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGCCCAAATGGCCACACATTGTGCTCAAACTGCAAGATCAGAGTTAGCAACTGTTGCCCGACCTGTCGTCATGAACTTGGAAACATTAGGTGCTTGGCACTGGAAAAGGTAGCTGAGTCGCTGGAAATCCCCTGCAAATACCAGAATTTGGGCTGTCAAGATATTTTTCCCTACTACAGTAAGCTTAAGCATGAGCAACACTGTCGATACCGTCCTTACAACTGCCCATATGCTGGATCAGAGTGTTCGGTCACGGGTGACATCCCGTCTCTTGTTGCACATCTCAAAGATGATCACAAGGTTGACATGCATGATGGGTGTACTTTCAATCATCGCTATGTGAAATCAAATCCACACGAAGTTGAAAATGCCACATGGATGCTAACGGTTTTCAACTGCTTTGGAAAGCAGTTCTGCTTGCATTTTGAGGCATTCCAGCTAGGAATGGCACCTGTTTACATGGCGTTTTTACGATTCATGGGTGACGATAACGAAGCAAAGAAGTTCAGCTACAGTTTGGAAGTGGGTGGCAATGGGCGTAAACTGATATGGCAAGGAATCCCGAGGGGCATCCGCGACAGTCACCGAAAAGTTCGTGACAGTCAGGACGGTCTCATTATTCAAAGAAACCTGGCACTGTATTTTTCGGGAGGAGAAAGGCAAGAGCTGAAGCTGAGAATTACAGGTCGAATATGGAAAGAAGAATGA 924 45.13 MAPGSSTCKEVVDSHPSVSGHDIAMSKSENISTSSKGPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNCCPTCRHELGNIRCLALEKVAESLEIPCKYQNLGCQDIFPYYSKLKHEQHCRYRPYNCPYAGSECSVTGDIPSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGKQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWKEE 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3138412 3143471 + ClCG04G000960.1 Cla04g00105 270333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00105 307 ProSiteProfiles Zinc finger RING-type profile. 59 95 IPR001841 -
Cla04g00105 307 CDD Sina 173 301 - -
Cla04g00105 307 Pfam Seven in absentia protein family 101 300 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cla04g00105 307 CDD RING-HC_SIAHs 57 95 - -
Cla04g00105 307 MobiDBLite consensus disorder prediction 21 36 - -
Cla04g00105 307 ProSiteProfiles Zinc finger SIAH-type profile. 112 172 IPR013010 GO:0008270
Cla04g00105 307 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 167 300 IPR008974 GO:0005515
Cla04g00105 307 SUPERFAMILY TRAF domain-like 112 304 - -
Cla04g00105 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 166 IPR013083 -
Cla04g00105 307 MobiDBLite consensus disorder prediction 1 36 - -
Cla04g00105 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 1 306 - -
Cla04g00105 307 SUPERFAMILY RING/U-box 53 100 - -
Cla04g00105 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 113 IPR013083 -
Cla04g00105 307 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02306 Cla-Chr2:38182634 Cla04g00105 Cla-Chr4:3138412 7.63E-161 dispersed
Cla04g00105 Cla-Chr4:3138412 Cla05g00970 Cla-Chr5:9788542 4.58E-161 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00105 K04506 - tcc:18599138 587.03