Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla04g00105 | ATGGCTCCAGGAAGCAGTACCTGCAAAGAAGTTGTTGATTCTCATCCTTCAGTTTCAGGTCATGACATAGCAATGTCTAAATCAGAGAATATTTCTACATCCTCAAAAGGCCCACTTGGTTTGAGTGGGAAAATTGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTTGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGCCCAAATGGCCACACATTGTGCTCAAACTGCAAGATCAGAGTTAGCAACTGTTGCCCGACCTGTCGTCATGAACTTGGAAACATTAGGTGCTTGGCACTGGAAAAGGTAGCTGAGTCGCTGGAAATCCCCTGCAAATACCAGAATTTGGGCTGTCAAGATATTTTTCCCTACTACAGTAAGCTTAAGCATGAGCAACACTGTCGATACCGTCCTTACAACTGCCCATATGCTGGATCAGAGTGTTCGGTCACGGGTGACATCCCGTCTCTTGTTGCACATCTCAAAGATGATCACAAGGTTGACATGCATGATGGGTGTACTTTCAATCATCGCTATGTGAAATCAAATCCACACGAAGTTGAAAATGCCACATGGATGCTAACGGTTTTCAACTGCTTTGGAAAGCAGTTCTGCTTGCATTTTGAGGCATTCCAGCTAGGAATGGCACCTGTTTACATGGCGTTTTTACGATTCATGGGTGACGATAACGAAGCAAAGAAGTTCAGCTACAGTTTGGAAGTGGGTGGCAATGGGCGTAAACTGATATGGCAAGGAATCCCGAGGGGCATCCGCGACAGTCACCGAAAAGTTCGTGACAGTCAGGACGGTCTCATTATTCAAAGAAACCTGGCACTGTATTTTTCGGGAGGAGAAAGGCAAGAGCTGAAGCTGAGAATTACAGGTCGAATATGGAAAGAAGAATGA | 924 | 45.13 | MAPGSSTCKEVVDSHPSVSGHDIAMSKSENISTSSKGPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNCCPTCRHELGNIRCLALEKVAESLEIPCKYQNLGCQDIFPYYSKLKHEQHCRYRPYNCPYAGSECSVTGDIPSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGKQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWKEE | 307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3138412 | 3143471 | + | ClCG04G000960.1 | Cla04g00105 | 270333 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla04g00105 | 307 | ProSiteProfiles | Zinc finger RING-type profile. | 59 | 95 | IPR001841 | - | |
Cla04g00105 | 307 | CDD | Sina | 173 | 301 | - | - | |
Cla04g00105 | 307 | Pfam | Seven in absentia protein family | 101 | 300 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Cla04g00105 | 307 | CDD | RING-HC_SIAHs | 57 | 95 | - | - | |
Cla04g00105 | 307 | MobiDBLite | consensus disorder prediction | 21 | 36 | - | - | |
Cla04g00105 | 307 | ProSiteProfiles | Zinc finger SIAH-type profile. | 112 | 172 | IPR013010 | GO:0008270 | |
Cla04g00105 | 307 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 167 | 300 | IPR008974 | GO:0005515 | |
Cla04g00105 | 307 | SUPERFAMILY | TRAF domain-like | 112 | 304 | - | - | |
Cla04g00105 | 307 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 166 | IPR013083 | - | |
Cla04g00105 | 307 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Cla04g00105 | 307 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE | 1 | 306 | - | - | |
Cla04g00105 | 307 | SUPERFAMILY | RING/U-box | 53 | 100 | - | - | |
Cla04g00105 | 307 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 27 | 113 | IPR013083 | - | |
Cla04g00105 | 307 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 1 | 306 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g02306 | Cla-Chr2:38182634 | Cla04g00105 | Cla-Chr4:3138412 | 7.63E-161 | dispersed | |
Cla04g00105 | Cla-Chr4:3138412 | Cla05g00970 | Cla-Chr5:9788542 | 4.58E-161 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla04g00105 | K04506 | - | tcc:18599138 | 587.03 |