Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00115 ATGGGAGACGGCAATAACACCAATAGAGGCCTTGTCTCCGCCAACGCCGCAAACCGGAACACCACCAACAACAGCAACAACGGCAGCCACCACAAGAAGCCCGAGTGGCTGCAGCAGTACGATCTAATTGGGAAGATCGGAGAAGGAACCTATGGCCTCGTGTTCCTTGCTAAAATCAAACCCCCTTCGCCAAGTCGCGGCAAGTCAATTGCCATCAAAAAATTTAAGCAATCTAAGGACGGTGATGGCGTCTCCCCAACTGCCATCCGCGAAATTATGTTACTGCGGGAAATATCACACGAAAATGTTGTCAAGCTTGTAAATGTTCATATCAACCATGCAGATATGTCGCTGTATTTAGCTTTTGATTATGCTGAACACGACCTCTACGAAATCATTAGACATCATCGGGACAAGGCTAACCATCCCCTTAATCAGTACACCGTTAAATCCTTGCTCTGGCAACTTCTCAATGGTTTGAACTATCTCCACAGCAATTGGATCATTCATCGCGATTTAAAGCCATCAAATATTTTGGTTATGGGTGAAGGAGAAGAACAAGGAGTGGTTAAAATAGCTGATTTTGGACTTGCAAGAATATACCAAGCTCCCTTGAAGCCATTATCTGAAAATGGAGTTGTTGTCACCATTTGGTATCGAGCACCTGAACTTCTCCTTGGAGCAAAGCACTATACTAGTGCTGTTGGTAGTAGACTGGGATATATTCTTTTCCCGAGTAAAAACAATTCTTCCTTTATAAAGAAATTAGATATGTGGGCTGTTGGATGTATTTTTGCCGAGCTTTTGACGTTGAAGCCATTATTTCAAGGTCAAGAAGTCAAAGGGACACCAAATCCTTTCCAGCTTGATCAACTCGACAAGATTTTTAAGGTTTTAGGCCATCCGACACTAGAGAAGTGGCCAACACTTGCTAATCTTCCACATTGGCAACAAGATCTACAGCACATCCAGGGGCATAAATATGACAATGCTGGATTGTATAATGTTGTCCACCTTTCTCCAAAAAGTCCTGCATACGATCTTCTGTCCAAAATGCTGGAGTATGATCCTCGAAAGCGTATAACAGCAGCCCAAGCCCTAGAGCATGAGTATTTTCGTTTAGAACCTCTTCCGGGATACAAGGAAGAGGAACCTAACAAATTGGGTTTATCAAATGGCGAAAGAAAAGAAACAGAGTTCCAGCACTCTGTAACATCTGGAAATACTGTAAACATGCAAGGTGCTCATATGGCAAGATCTGTCCCTCGGGCAATGGGAGTTGGCATGCCTAGGATGCCGCATCAGAGCATGGCTGCCTACAACCTTGCATCTCAGGCTGGGATGGGTATGAATCCTGGTGGCATCCCTATGCAGCGAGGTGTCTCTTCCCAAGCTCATCAGCAACAACAGTTAAGGAGAAAAGATCCTGGAATGGGAATGTCTGGTTATCCTCCCCAGCAGAAACAACAAAGACGGTACTGA 1482 44.53 MGDGNNTNRGLVSANAANRNTTNNSNNGSHHKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANHPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVGSRLGYILFPSKNNSSFIKKLDMWAVGCIFAELLTLKPLFQGQEVKGTPNPFQLDQLDKIFKVLGHPTLEKWPTLANLPHWQQDLQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRLEPLPGYKEEEPNKLGLSNGERKETEFQHSVTSGNTVNMQGAHMARSVPRAMGVGMPRMPHQSMAAYNLASQAGMGMNPGGIPMQRGVSSQAHQQQQLRRKDPGMGMSGYPPQQKQQRRY 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3370638 3385841 + ClCG04G001090.2 Cla04g00115 270343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00115 493 PANTHER CELL DIVISION PROTEIN KINASE 28 487 - -
Cla04g00115 493 SMART serkin_6 40 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00115 493 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Cla04g00115 493 ProSiteProfiles Protein kinase domain profile. 40 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00115 493 Gene3D Transferase(Phosphotransferase) domain 1 123 380 - -
Cla04g00115 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Cla04g00115 493 SUPERFAMILY Protein kinase-like (PK-like) 35 373 IPR011009 -
Cla04g00115 493 PANTHER CYCLIN-DEPENDENT KINASE E-1 28 487 - -
Cla04g00115 493 CDD STKc_CDK8_like 39 372 - -
Cla04g00115 493 ProSitePatterns Protein kinases ATP-binding region signature. 46 74 IPR017441 GO:0005524
Cla04g00115 493 MobiDBLite consensus disorder prediction 454 493 - -
Cla04g00115 493 MobiDBLite consensus disorder prediction 457 471 - -
Cla04g00115 493 Pfam Protein kinase domain 40 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00115 Cla-Chr4:3370638 Cla08g01693 Cla-Chr8:29530279 1.34E-75 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80470 PF00069 Pkinase 3.50E-62 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00115 K02208 - csv:101203984 858.211