Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla04g00115 | ATGGGAGACGGCAATAACACCAATAGAGGCCTTGTCTCCGCCAACGCCGCAAACCGGAACACCACCAACAACAGCAACAACGGCAGCCACCACAAGAAGCCCGAGTGGCTGCAGCAGTACGATCTAATTGGGAAGATCGGAGAAGGAACCTATGGCCTCGTGTTCCTTGCTAAAATCAAACCCCCTTCGCCAAGTCGCGGCAAGTCAATTGCCATCAAAAAATTTAAGCAATCTAAGGACGGTGATGGCGTCTCCCCAACTGCCATCCGCGAAATTATGTTACTGCGGGAAATATCACACGAAAATGTTGTCAAGCTTGTAAATGTTCATATCAACCATGCAGATATGTCGCTGTATTTAGCTTTTGATTATGCTGAACACGACCTCTACGAAATCATTAGACATCATCGGGACAAGGCTAACCATCCCCTTAATCAGTACACCGTTAAATCCTTGCTCTGGCAACTTCTCAATGGTTTGAACTATCTCCACAGCAATTGGATCATTCATCGCGATTTAAAGCCATCAAATATTTTGGTTATGGGTGAAGGAGAAGAACAAGGAGTGGTTAAAATAGCTGATTTTGGACTTGCAAGAATATACCAAGCTCCCTTGAAGCCATTATCTGAAAATGGAGTTGTTGTCACCATTTGGTATCGAGCACCTGAACTTCTCCTTGGAGCAAAGCACTATACTAGTGCTGTTGGTAGTAGACTGGGATATATTCTTTTCCCGAGTAAAAACAATTCTTCCTTTATAAAGAAATTAGATATGTGGGCTGTTGGATGTATTTTTGCCGAGCTTTTGACGTTGAAGCCATTATTTCAAGGTCAAGAAGTCAAAGGGACACCAAATCCTTTCCAGCTTGATCAACTCGACAAGATTTTTAAGGTTTTAGGCCATCCGACACTAGAGAAGTGGCCAACACTTGCTAATCTTCCACATTGGCAACAAGATCTACAGCACATCCAGGGGCATAAATATGACAATGCTGGATTGTATAATGTTGTCCACCTTTCTCCAAAAAGTCCTGCATACGATCTTCTGTCCAAAATGCTGGAGTATGATCCTCGAAAGCGTATAACAGCAGCCCAAGCCCTAGAGCATGAGTATTTTCGTTTAGAACCTCTTCCGGGATACAAGGAAGAGGAACCTAACAAATTGGGTTTATCAAATGGCGAAAGAAAAGAAACAGAGTTCCAGCACTCTGTAACATCTGGAAATACTGTAAACATGCAAGGTGCTCATATGGCAAGATCTGTCCCTCGGGCAATGGGAGTTGGCATGCCTAGGATGCCGCATCAGAGCATGGCTGCCTACAACCTTGCATCTCAGGCTGGGATGGGTATGAATCCTGGTGGCATCCCTATGCAGCGAGGTGTCTCTTCCCAAGCTCATCAGCAACAACAGTTAAGGAGAAAAGATCCTGGAATGGGAATGTCTGGTTATCCTCCCCAGCAGAAACAACAAAGACGGTACTGA | 1482 | 44.53 | MGDGNNTNRGLVSANAANRNTTNNSNNGSHHKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANHPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVGSRLGYILFPSKNNSSFIKKLDMWAVGCIFAELLTLKPLFQGQEVKGTPNPFQLDQLDKIFKVLGHPTLEKWPTLANLPHWQQDLQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRLEPLPGYKEEEPNKLGLSNGERKETEFQHSVTSGNTVNMQGAHMARSVPRAMGVGMPRMPHQSMAAYNLASQAGMGMNPGGIPMQRGVSSQAHQQQQLRRKDPGMGMSGYPPQQKQQRRY | 493 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3370638 | 3385841 | + | ClCG04G001090.2 | Cla04g00115 | 270343 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla04g00115 | 493 | PANTHER | CELL DIVISION PROTEIN KINASE | 28 | 487 | - | - | |
Cla04g00115 | 493 | SMART | serkin_6 | 40 | 372 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla04g00115 | 493 | Gene3D | Phosphorylase Kinase; domain 1 | 19 | 122 | - | - | |
Cla04g00115 | 493 | ProSiteProfiles | Protein kinase domain profile. | 40 | 372 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla04g00115 | 493 | Gene3D | Transferase(Phosphotransferase) domain 1 | 123 | 380 | - | - | |
Cla04g00115 | 493 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 168 | 180 | IPR008271 | GO:0004672|GO:0006468 | |
Cla04g00115 | 493 | SUPERFAMILY | Protein kinase-like (PK-like) | 35 | 373 | IPR011009 | - | |
Cla04g00115 | 493 | PANTHER | CYCLIN-DEPENDENT KINASE E-1 | 28 | 487 | - | - | |
Cla04g00115 | 493 | CDD | STKc_CDK8_like | 39 | 372 | - | - | |
Cla04g00115 | 493 | ProSitePatterns | Protein kinases ATP-binding region signature. | 46 | 74 | IPR017441 | GO:0005524 | |
Cla04g00115 | 493 | MobiDBLite | consensus disorder prediction | 454 | 493 | - | - | |
Cla04g00115 | 493 | MobiDBLite | consensus disorder prediction | 457 | 471 | - | - | |
Cla04g00115 | 493 | Pfam | Protein kinase domain | 40 | 372 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla04g00115 | Cla-Chr4:3370638 | Cla08g01693 | Cla-Chr8:29530279 | 1.34E-75 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80470 | PF00069 | Pkinase | 3.50E-62 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla04g00115 | K02208 | - | csv:101203984 | 858.211 |