Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00118 ATGAAGCAATATCATTTGATTTGCCCTACTCTTTTCGAAGACTTTTTGCAACGTTGTCAGTATATTGTGAGCCTACTGATGCAAATGAATTGTCTGTATGTAACATCTCTAAGTATAGTTGATACGACAATCAAAACTGATGATGATGATGATGATCGAACATTTAAAGATATAATGGAAAATTCAAAGCCATTTGGAGGAAAGATTCAATACGACTATGTTTTGCCATTTCTATTAATAAAGCTCAAGGACAACAAAGATCTTCCTGAACATGTTTTCTCCCATGGGCAATTGTACGTGACACTCTCAAAAGGCATCTCTATGGCAACAACAAAGATGCTGATGTTTAACAACACATCAAAAGGGGAAAACGATTCTCACGGAGGAGGAATGAATGTAAATGCACAAAATTTCGTGAAAAATCCACCGGATTCTCTAAGAAGAATCGATCAAATCGCGAAAAACGGCGTAAATTCCGGTAATCTGACGTCGACAGTGAATGCTGAGATTCACTCCAGTCAGCCAGGGGGATCGATTGCGCCAATTCCGACCAGCACATCAGCGACGAACTTGAAGAACCTAAACAATAACAACAACAGCAACAATAACAACAACTCTGGTTTCATGGCGACGAAGGGCGGTGGCAGCGGAGGAAATAATTATCGTTGTGACAGCATGGAGACGCCGGGAGTGGTGATAAAGCCGCACACTGGCGGAGATGTGCGGTGGGATGCCATTAACATGGTGTCGAAAGGAGGGGCTTTGAATCTAAGCCATTTCCAGTTATTGAAGAGGCTTGGTTATGGGGATATTGGAAGCGTTTATTTGGTTGAATTGAGAGGAACTGATACATTTTTCGCCATGAAAGTGATGGATAAAGCTTCATTAGCAAGTAGGAATAAGCTTTTGAGGGCACAAACAGAAAGGGAAATTCTAGGGCTTTTGGATCATCCATTTTTGCCTACTCTCTATTCCTATTTTGAAACAGATAAGTTCTATTGTTTGGTTATGGAGTTTTGTAGTGGTGGTAATCTTCATTCTCTTCGACAAAAGCAACCTAATAAGTATTTTACAGAAGAAGCTGCCAGATTCTATGCATCGGAGGTTCTATTAGCACTGGAATACCTTCATATGTTAGGCATAGTCTATAGAGATTTGAAACCCGAAAATCTCTTAATCCGAGACGAAGGTCACATCATGCTCTCCGATTTCGATCTCTCTCTCCGCTGCTCCGTCAGCCCCACTCTTGTCAAATCCTCCTCCGTCAACGTCAACGGCAGCTCCGCCACCGGCAATACCGGCGCCAATGGCGGAGGCAGCGGTGGTATCCTCGACGACGAGTTCGTCGTCCACGGCTGTATGCAGCCTTCCAACTTCCTCCCTCGCATCCTCCCTTCCAAGAAGAACCGCAAGTCCAAATCCGACTTCGGCCTCTTCGTCGGCGGCTCCCTCCCTGAACTCATGGCCGAGCCTACCAACGTCAGATCTATGTCCTTCGTCGGCACTCACGAGTATCTCGCTCCGGAGATCATCCAAGGCGAAGGCCACGGCAGCGCCGTCGACTGGTGGACCTTCGGAATCTTCCTCTACGAGCTTCTCCACGGAACCACGCCTTTCAAAGGATCTGGAAATAGAGCTACTCTGTTCAACGTCGTCGAACAACCACTCAGATTCCCCGATGCGCCGCAAGTCAGTCTAGCCGCTAGAGATCTGATCAGAGGGCTCCTCGTCAAGGAGCCGCAAAAAAGAATCGCATATCGGAGAGGCGCAACTGAGATTAAACAGCATCCTTTCTTCGACGGAGTGAATTGGGCGTTGGTGAGAAGCGCTATGCCGCCGCACGTCCCGGAGCCGCTCGATTTCTCGCAGTTCGCTAGAAAGAAGAACTGCACCGGAGCGGCGGAAGACAAGAAACCGGTGGAAATACCGGCGGCTACGTCGTCGACCACGGCAACCCCGGCGGCGGCGGAGAATTCTTCGCCTTCTACTGGTAGCGATCCCAATTACGTGGATTTTGAGTACTTCTAG 2028 47.39 MKQYHLICPTLFEDFLQRCQYIVSLLMQMNCLYVTSLSIVDTTIKTDDDDDDRTFKDIMENSKPFGGKIQYDYVLPFLLIKLKDNKDLPEHVFSHGQLYVTLSKGISMATTKMLMFNNTSKGENDSHGGGMNVNAQNFVKNPPDSLRRIDQIAKNGVNSGNLTSTVNAEIHSSQPGGSIAPIPTSTSATNLKNLNNNNNSNNNNNSGFMATKGGGSGGNNYRCDSMETPGVVIKPHTGGDVRWDAINMVSKGGALNLSHFQLLKRLGYGDIGSVYLVELRGTDTFFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKYFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVNVNGSSATGNTGANGGGSGGILDDEFVVHGCMQPSNFLPRILPSKKNRKSKSDFGLFVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVEQPLRFPDAPQVSLAARDLIRGLLVKEPQKRIAYRRGATEIKQHPFFDGVNWALVRSAMPPHVPEPLDFSQFARKKNCTGAAEDKKPVEIPAATSSTTATPAAAENSSPSTGSDPNYVDFEYF 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3421773 3426751 - ClCG04G001110.2 Cla04g00118 270346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00118 675 PANTHER FLIPPASE KINASE 1-RELATED 180 675 - -
Cla04g00118 675 MobiDBLite consensus disorder prediction 632 675 - -
Cla04g00118 675 SUPERFAMILY Protein kinase-like (PK-like) 257 632 IPR011009 -
Cla04g00118 675 SMART serkin_6 260 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00118 675 MobiDBLite consensus disorder prediction 172 213 - -
Cla04g00118 675 Gene3D Phosphorylase Kinase; domain 1 258 343 - -
Cla04g00118 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 381 393 IPR008271 GO:0004672|GO:0006468
Cla04g00118 675 Pfam Protein kinase domain 449 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00118 675 Pfam Protein kinase domain 261 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00118 675 MobiDBLite consensus disorder prediction 643 667 - -
Cla04g00118 675 ProSiteProfiles Protein kinase domain profile. 260 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00118 675 Gene3D Transferase(Phosphotransferase) domain 1 344 413 - -
Cla04g00118 675 Gene3D Transferase(Phosphotransferase) domain 1 474 617 - -
Cla04g00118 675 CDD STKc_phototropin_like 258 620 - -
Cla04g00118 675 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 180 675 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00118 Cla-Chr4:3421773 Cla10g01319 Cla-Chr10:28103576 0 dispersed
Cla04g00118 Cla-Chr4:3421773 Cla01g02066 Cla-Chr1:35111622 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80471 PF00069 Pkinase 1.30E-21 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00118 - - csv:101204230 890.567