Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00220 ATGCAGAGTAGATCACTTCAAGAGGGAGAGAGAGAGAGAGAGAGCAGAATTTCAATCACTGTAGCATCTTATCACTTTCTTCACCGATTTCCCAACCCTTCTTCCGATTTGATTCCTGCCGCAGGTGTAGGGATTTTGCTTCCTGACGAACACTATTGTGCTTGGGGTCGAACGACAACGATATATGTTCATTGGGCAGTTCGTACTGATGTAGAATGGCTGAATAATCTAAGAGCTGGTCTAGCTTTTTTAAATCTGTGCTGCATCACTGATATGATGGTTAAGGAAAATTTGCTGCAGAGAGTTGATGACAATGCTAAAGAGAATGATTGTTCGAGTATTGGGAATGAAGATTTGGGTTCTCAGTCTCGCCACAGTGTAGGGAAGGAATCTGGGGTCAGTTGTCGTGTGTGTCAATGTATTGAATCTGACAGAAGAGGTGATGCTGTTTTAGGATTTCTGGGCATCACTCCTCCAATTATGGAAGCAAGAAAATATGATGGGGATTCTAAGCCTGAGAAGCAAAGTGCAGAAAATGTTTATGATGGTTCTGAGCTGAAAAAAGATGTTAAAGGGGATTCTGGTTCAATTAAGTTCATAGGCCCTAATGGGGAGGTTTTCATTTGCAAAGCTGATATCGAAATGGGTTCATGTCATCATGAAGATGTATTAGTGGAGCTTGGGTGTTCTTGCAAGAGTGACCTTGCACTTGTACACTATGCATGTGCTCTCAAGTGGTTTGTCAGCCATGGATCTACAGTTTGTGAAATCTGTGGATGTACTGCAGAAAATATTAGAACTGATGACTTTAGAAAGGTTGTGAGTTCTTTGAAAGAATATGAAGCTTTGAGGGAAAGAACTGTTAGTGGGGAACCTAATCCTATGCAGACTATTGCTGGTACCGATATAGATCCTGATGCTGTTGCTGCTGTCCGCAGGCAGCGGCTAAGTGAAATCTCATTGTGGTTCAGTCCTCATAATTATAGTAGCAACAATAACTCTACTGCAGCCTCCCAGGTTGTTTCTGAACATCTGAATACCATCTCAGAAAATGTTGTTCATTCCGAAAATCCTGCAACCAGGTGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACAGGGCTGCTTACTGTTACGCTTGCTTGCCTCATAGCTCCTCGTGTGGGGAAGAAAACTGCGAAAAGTGGCCTTCATATTCTTCTTGGAGGAGTTTGTGCGTTAACAGTTGTGGTTTTCTTCCGCTTTTTTGTGCTAACTAGGATAAAATATGGACCTGCACGATACTGGGCCATTTTGTTCGTCTTTTGGTTCCTGGTGTTTGGTATTTGGGCGTCGAGGACACATGCTGCTCATACGACGTAA 1362 43.02 MQSRSLQEGERERESRISITVASYHFLHRFPNPSSDLIPAAGVGILLPDEHYCAWGRTTTIYVHWAVRTDVEWLNNLRAGLAFLNLCCITDMMVKENLLQRVDDNAKENDCSSIGNEDLGSQSRHSVGKESGVSCRVCQCIESDRRGDAVLGFLGITPPIMEARKYDGDSKPEKQSAENVYDGSELKKDVKGDSGSIKFIGPNGEVFICKADIEMGSCHHEDVLVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCTAENIRTDDFRKVVSSLKEYEALRERTVSGEPNPMQTIAGTDIDPDAVAAVRRQRLSEISLWFSPHNYSSNNNSTAASQVVSEHLNTISENVVHSENPATRWAVEGTGILLATGLLTVTLACLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6891453 6900166 + ClCG04G002030.1 Cla04g00220 270448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00220 453 ProSiteProfiles Zinc finger RING-CH-type profile. 201 265 IPR011016 GO:0008270
Cla04g00220 453 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 92 452 - -
Cla04g00220 453 SMART ringv_2 218 259 IPR011016 GO:0008270
Cla04g00220 453 SUPERFAMILY RING/U-box 226 261 - -
Cla04g00220 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 262 IPR013083 -
Cla04g00220 453 Pfam RING-variant domain 224 258 IPR011016 GO:0008270
Cla04g00220 453 PANTHER ZINC FINGER, RING-CH-TYPE 92 452 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00220 Cla-Chr4:6891453 Cla03g00103 Cla-Chr3:1069243 1.88E-09 dispersed
Cla04g00220 Cla-Chr4:6891453 Cla07g00249 Cla-Chr7:2744188 2.49E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00220 - - csv:101218157 674.855