Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00250 ATGGCAGAGGCGGCGGCAGCCGGTTTCTGGCGGAAGCTATTAACCGGACGGTGGTTGATGCTATTTGCATCACTAACAATCATGGCAATGAACGGATCAGGCTACATGTTCGGGCTCTACTCCCCCCGCATCAAATCCATTTTTGGTTACGATCAGTCGGCTCTCAATTTGATCAGCTTCTTCAAGGACTTGGGTGGCAATCTTGGGGTGGTTTCCGGCCTCCTCTACGAGGTGGCGCCACCATGGGTGGTTCTCTCGGTCGGCGCCGTCCTCAACTTCTTCGCCTATTTCATGCTCTGGTTGGCAGTTTCCGGCCGGACCGCCGCACCGGGGCTGTGGCTGATGTGCGTTTATATGGGCGTTGCTGCTAACTCATTGTCTTTTGCTAATACGGCGGCTTTGGTTACTTGTGTTCGTAACTTTCCTCTTCATCGTGGCTGCCTTCTTGGCCTTCTTAAAGGGTACATAGGTTTAAGTGGTGCAATAATGACACAACTTTATCAGGCCATGTATGGAGATGACCCAGAAGGCCTTATTTTGATGATTGCTTGGCTCCCATCCGCTGTCTCATTAGCTTCCCTTCCACTAATTCGAGTGATGAACACCAATAACCACCAAGCCAATGAACTCAAACCATTCTACACCCTTCTTTACATATCCCTTGCCCTTTCCACCTCTCTCATCGCCATTATCATCCCTCAAACTAAATTTCACTTCTCTAAAACCCACTATATTGCCGCCGCTTCTCCCGTCCTTCTCTTTCTCCTCCTCCCACTCGTCGTTGTTGTTAACCAAGAACTCGCCCTCCACAATCACCCACCTCCAACGTCGATACAAGTACAACCGTCGTCACTGCACCCGGCGACGACGACGACCCATTGGTACAAAAACATCTTCACCAGACGGCCCTCGCTTGGAGACGATCACACCATCTTGCAAGCAATTTTAAGCATGGACATGGCAATTCTATTTGTCGCAACAACGTGTGGCGTCGGAGGAGCATTGACGGTGGTCGATAATGTCGCACAAATCGGCGCATCGTTAGACTATCCAGCTCATAGCATTTCGAGTTTCGTGTCACTAATGAGCATTTGGAACTTCCTAGGTCGTGTAGTGGCAGGGTATGTTTCTGAATTTCTTTTGATGAAGTATGGATTACCTCGACCATTGATGCTCACTTTTGTCATACTAATGTCTTGCATTGGCCATATCTTGATTGCGTTTGGTGTCCCAAACTCTCTCTATTTTGCCTCCATCATCACTGGGTTTTGCTTGGGGGCACAACTGCCATTAACGGCCACGATCGTCTCTGATCTTTTTGGGTTGAAACACTATTCAACGTTGTACAACGTAGGATCTGTGTCAAGCCCTTTCGGATCCTACATTTTCAATGTTAGAGTGGCAGGTGGGGTTTATGATAGAGAAGGGGAAAGGCAAAGTAATGGGATCACAAAACCCACTGCTTCTGGCAGTCATCCTCGTTACCAGTCGCTCCGAAATGCCCCACTGGTTAAAATGAGGAAAATTAGAAGAGAAGACCAAAAAAGATCAAAACCGAGCTTAAAAAACAGTGAAAAAGAGAAGAAAAACCATAAAGTTGCCAAAACAAGGCAGCGCCGGGACGGTGCTGCTAAGTCGATAATTCCCGAGGGGTCGTCTGCCGCAGCACAGTGCCAGCGCCGCAACGCTATCCAACAGCGTCGCGGCACTGTCTTTCCATATTTGGCAGCGGTCGACGCTATGGACCAGAGCCGCAGTGCTAGTATTCCTTAA 1773 48.9 MAEAAAAGFWRKLLTGRWLMLFASLTIMAMNGSGYMFGLYSPRIKSIFGYDQSALNLISFFKDLGGNLGVVSGLLYEVAPPWVVLSVGAVLNFFAYFMLWLAVSGRTAAPGLWLMCVYMGVAANSLSFANTAALVTCVRNFPLHRGCLLGLLKGYIGLSGAIMTQLYQAMYGDDPEGLILMIAWLPSAVSLASLPLIRVMNTNNHQANELKPFYTLLYISLALSTSLIAIIIPQTKFHFSKTHYIAAASPVLLFLLLPLVVVVNQELALHNHPPPTSIQVQPSSLHPATTTTHWYKNIFTRRPSLGDDHTILQAILSMDMAILFVATTCGVGGALTVVDNVAQIGASLDYPAHSISSFVSLMSIWNFLGRVVAGYVSEFLLMKYGLPRPLMLTFVILMSCIGHILIAFGVPNSLYFASIITGFCLGAQLPLTATIVSDLFGLKHYSTLYNVGSVSSPFGSYIFNVRVAGGVYDREGERQSNGITKPTASGSHPRYQSLRNAPLVKMRKIRREDQKRSKPSLKNSEKEKKNHKVAKTRQRRDGAAKSIIPEGSSAAAQCQRRNAIQQRRGTVFPYLAAVDAMDQSRSASIP 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7838083 7844806 - ClCG04G002330.2 Cla04g00250 270478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00250 590 CDD MFS_Mch1p_like 16 492 - -
Cla04g00250 590 Gene3D MFS general substrate transporter like domains 315 481 IPR036259 -
Cla04g00250 590 SUPERFAMILY MFS general substrate transporter 216 474 IPR036259 -
Cla04g00250 590 MobiDBLite consensus disorder prediction 476 561 - -
Cla04g00250 590 MobiDBLite consensus disorder prediction 505 544 - -
Cla04g00250 590 PANTHER FACILITATOR SUPERFAMILY PROTEIN, PUTATIVE-RELATED 5 485 - -
Cla04g00250 590 Pfam Nodulin-like 17 263 IPR010658 -
Cla04g00250 590 SUPERFAMILY MFS general substrate transporter 6 200 IPR036259 -
Cla04g00250 590 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 5 485 - -
Cla04g00250 590 MobiDBLite consensus disorder prediction 481 496 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00250 Cla-Chr4:7838083 Cla08g00796 Cla-Chr8:20364090 0 dispersed
Cla10g01898 Cla-Chr10:34867960 Cla04g00250 Cla-Chr4:7838083 6.47E-06 dispersed
Cla04g00250 Cla-Chr4:7838083 Cla04g00251 Cla-Chr4:7844742 9.26E-106 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00250 - - csv:101220925 767.689