Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00364 ATGTTTGTCCCCAAACAAATTCCTCTTCCTCATCCTCAAACACCAAAATCCACCATGGGAAGAGGAAGAGTCGAGATCAAGAAGATTGAGAATATCAACAGCAGACAAGTTACTTTCTCTAAACGCCGTAATGGGTTGATGAAAAAGGCCAAAGAATTATCAGTTCTTTGTGATGCTGAAGTCGCCATTGTTGTCTTCTCCAGCACTGGAAGGCTTTATGAATTCTCCAGCACTAGCATGGAACATACACTTTCAAGGTACAGAGGACAGGGCATGGAGTTGGATTTTCCAAAAGAGACTTTGGACCACCCAACACAACTGCCACCATCTGATTCTGATGCAAAGTCGTCTGAGGAGGAGATCGCAAGGCTAAAGTTAGCATATATGCAGATGAGAGGCCAGGAACTGGATAGTTTGAGCTTTATAGACCTACAAAACTTAGAAAATCAGTTGCGGGAAGGGATCGTATCTATCAAAGACAAGAAGGAGACATTACTTTTGGAGCAGCTCCAAAGGTGTAGGTCACAGGAGGAAGTAGTCATTTCAGAGAATGAGACTCTGCGAAAACAGCTAGAGGAGTTTCAGCAGAGAAACAATGCAACACTCCTGGAGTCCAGCCCCCTTCAGAGATCCTACCTTTCGGATTCGAAAACCGCTTCTACGAACGAGACTGAGGCCGAGACCGAGGCAGAGGAAAATGACCGCTCAGAAATTTCCTTGCATCTGGGGTTGTCATTGAATGGTCGACAAAAAAGGAAACGATCGGTTGAAGGTGCGAGCAACGACACAACATGCAGTCAAGTAGACTTGGGAAGGGGATGA 822 45.38 MFVPKQIPLPHPQTPKSTMGRGRVEIKKIENINSRQVTFSKRRNGLMKKAKELSVLCDAEVAIVVFSSTGRLYEFSSTSMEHTLSRYRGQGMELDFPKETLDHPTQLPPSDSDAKSSEEEIARLKLAYMQMRGQELDSLSFIDLQNLENQLREGIVSIKDKKETLLLEQLQRCRSQEEVVISENETLRKQLEEFQQRNNATLLESSPLQRSYLSDSKTASTNETEAETEAEENDRSEISLHLGLSLNGRQKRKRSVEGASNDTTCSQVDLGRG 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13538667 13542784 + ClCG04G003520.2 Cla04g00364 270592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00364 273 Coils Coil 177 204 - -
Cla04g00364 273 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677|GO:0046983
Cla04g00364 273 CDD MADS_MEF2_like 20 88 IPR033896 GO:0000977|GO:0045944
Cla04g00364 273 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 254 - -
Cla04g00364 273 SUPERFAMILY SRF-like 20 89 IPR036879 GO:0003677|GO:0046983
Cla04g00364 273 MobiDBLite consensus disorder prediction 1 20 - -
Cla04g00364 273 Coils Coil 114 134 - -
Cla04g00364 273 SMART madsneu2 19 78 IPR002100 GO:0003677|GO:0046983
Cla04g00364 273 Gene3D - 31 97 IPR036879 GO:0003677|GO:0046983
Cla04g00364 273 MobiDBLite consensus disorder prediction 259 273 - -
Cla04g00364 273 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 75 IPR002100 GO:0003677|GO:0046983
Cla04g00364 273 MobiDBLite consensus disorder prediction 99 118 - -
Cla04g00364 273 Coils Coil 144 164 - -
Cla04g00364 273 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677|GO:0046983
Cla04g00364 273 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677|GO:0046983
Cla04g00364 273 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677|GO:0046983
Cla04g00364 273 MobiDBLite consensus disorder prediction 206 273 - -
Cla04g00364 273 ProSitePatterns MADS-box domain signature. 21 75 IPR002100 GO:0003677|GO:0046983
Cla04g00364 273 Pfam K-box region 118 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla04g00364 273 PANTHER BNAC04G24260D PROTEIN 19 254 - -
Cla04g00364 273 ProSiteProfiles K-box domain profile. 107 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla04g00364 273 MobiDBLite consensus disorder prediction 206 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00364 Cla-Chr4:13538667 Cla10g01155 Cla-Chr10:26113807 4.44E-49 dispersed
Cla04g00364 Cla-Chr4:13538667 Cla10g00943 Cla-Chr10:22268981 2.08E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60885 PF01486 K-box 2.90E-13 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00364 - - csv:101205930 449.899