Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla04g00389 | ATGGCGGATTACGATCTAACTCCACGAATCGCGCCGAATCTGGACCGTCATCTTGTTTTCCCTCTCCTTGAGTTCCTTCAAGAGAGGCAGCTTTACCCCGATGAGCAGATCCTCAAGGCCAAAATCGAGCTTCTCAATAAGACCAACATGGTCGATTACGCCATGGACATCCACAAGTCACTCTACCACACTGACGATGTTCCTCAAGGCATGGGCATTTGCGATGGGATTGGTGCAGATATGGTGGACAGGAGGGCGGAAGTGGTTGCGAGGCTTAAGGCTTTGGAGGAGTCTGCAGCGCCACTTGTTGCTTTTCTGCAGAATCCGGCTGCGGTTCAGGAACTGAGGGCTGATAAGCAGTACAATCTTCAAATGCTTAATGATCGTTACCAGATTGGTCCAGATCAAATAGAAGCATTGTATCAATATGCCAAATTTCAGTTCGAGTGTGGGAACTATTCTGGTGCTGCTGACTATCTCTATCAGTACAGAGCCTTATGCACAAACAGTGAAAGGAGCCTGAGTGCTCTATGGGGAAAATTGGCAGCTGAGGTTTTAATGCAGAACTGGGATATTGCTGTTGAAGAGCTTAATCGTTTGAAGGAAATCATTGACTCTAAGGTGAATTTTTCATCACCTATGAATCAAGTGCAAAGCAGAATATGGTTGATGCACTGGAGCCTCTTCATCTTTTTCAACCACGACAATGGAAGAACACAGATAATTGACCTGTTTAATCAAGATAAGTATTTAAATGCGATTCAAACCAATGCTCCACATCTTTTACGCTATTTGGCTACTGCATTCATCGTTAACAAAAGGCGGAGGCCACAATTCAAAGATTTTATCAAGGTTATTCAGCAAGAACAGAATTCCTATAAGGATCCTATCACAGAGTTTTTGACTTGTGTCTATGTCAATTATGATTTTGACGGGGCACAAAAGAAGATGAGAGAGTGTGAAGAAGTTATATTGAATGATCCTTTCCTAGGCAAGAGGCTTGAAGAAGGAAACCTTTCTACTGTCCCTTTGAGAGACGAGTTTTTGGAAAATGCTCGCCTTTTCATCTTTGAGACTTACTGCAGAATACATCAGCGCATTGATATGAATGTCCTTGCTGAGAAGTTGAACTTAAATTACGAGGAAGCTGAGAGGTGGATTGTTAATCTTGTTCGGACCTCAAAGCTCGATGCAAAGATTGATTCCAAGACAGGAACGGTTATAATGGAACCAAACCAGCCCAATGTATATGAAGAACTGATAGACCACACAAAATCATTATCTGGGCGTACTTACAAGTTAGTCACTCAACTTCTAGAGCATGCACAGGCTCAGGCAACCAGATAA | 1347 | 42.91 | MADYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEQILKAKIELLNKTNMVDYAMDIHKSLYHTDDVPQGMGICDGIGADMVDRRAEVVARLKALEESAAPLVAFLQNPAAVQELRADKQYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEVLMQNWDIAVEELNRLKEIIDSKVNFSSPMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGAQKKMRECEEVILNDPFLGKRLEEGNLSTVPLRDEFLENARLFIFETYCRIHQRIDMNVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVIMEPNQPNVYEELIDHTKSLSGRTYKLVTQLLEHAQAQATR | 448 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 14713133 | 14716995 | + | ClCG04G003770.1 | Cla04g00389 | 270617 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla04g00389 | 448 | PIRSF | Transl_init_eIF3e | 1 | 448 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
| Cla04g00389 | 448 | Pfam | eIF3 subunit 6 N terminal domain | 5 | 147 | IPR019010 | - | |
| Cla04g00389 | 448 | Gene3D | - | 193 | 444 | - | - | |
| Cla04g00389 | 448 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E | 1 | 446 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
| Cla04g00389 | 448 | SMART | PINT_4 | 343 | 427 | IPR000717 | - | |
| Cla04g00389 | 448 | Pfam | PCI domain | 296 | 410 | IPR000717 | - | |
| Cla04g00389 | 448 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E | 1 | 446 | - | - | |
| Cla04g00389 | 448 | SMART | eIF3_N_2 | 5 | 147 | IPR019010 | - | |
| Cla04g00389 | 448 | SUPERFAMILY | TPR-like | 130 | 203 | IPR011990 | GO:0005515 | |
| Cla04g00389 | 448 | SUPERFAMILY | Winged helix DNA-binding domain | 344 | 415 | IPR036390 | - | |
| Cla04g00389 | 448 | Hamap | Eukaryotic translation initiation factor 3 subunit E [EIF3E]. | 2 | 440 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
| Cla04g00389 | 448 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 343 | 427 | - | - | |
| Cla04g00389 | 448 | ProSiteProfiles | PCI domain profile. | 230 | 414 | IPR000717 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla04g00389 | K03250 | - | csv:101205199 | 860.907 |