Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00444 ATGGGTTCTTCTGTTGCTGCAATGGGCATGGTTTCAGACTCCAAATTCCATGTTCTTGCTGTTGATGATAGCGTTATCGATAGGAAATTGATTGAAAGGCTCCTTAAAACCTCCTCTTACCAAGTCACTACGGTTGATTCTGGAAGTAAAGCTTTGGAGTTTCTGGGATATGACCCTGGAAATAACTCGATTCCTTCTGTTTCATCTAACCATCATCATCATCATCAGGAAGTGGATGTGAATCTTGTTATTACTGATTACTGTATGCCTGAGATGACTGGCTATGATTTGTTGAAGAAGATCAAGGGGTCTACAGCTCTGAGAAACATACCTGTTGTGATTATGTCATCTGAGAATGTGCCTGCAAGAATCAATAGATGCTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTCCGACTTTCGGATGTCAACCGGCTTAGACCCCACATGTTGAAAACCAAACTCAAATGTGGCAAACCAGAAAAAGCAGTAGAAAATGAGCCTGATTCAGGAAGCCAATCCCAAGCACTAGAGCAACAACATCAACAACGACATGAACAAGAACAATTACGACCGCTATCGCAGCAGATCCCGACATCGCTGCAAGATCAAGATGAATTGCAATCTGTACCACTTCTGCCAACACCAACACAGGAGCAAGAACAGTTGCAATTACTCCCGCCAACACCACCGCAACAATCAAACAACAACAAGAGGAAGGCAATGGAAGATGGACTTTCTCCCGATAGAACAAGGCCTAGATACAATGGTATTACCACCATGGTGTAG 795 43.14 MGSSVAAMGMVSDSKFHVLAVDDSVIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDPGNNSIPSVSSNHHHHHQEVDVNLVITDYCMPEMTGYDLLKKIKGSTALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLRPHMLKTKLKCGKPEKAVENEPDSGSQSQALEQQHQQRHEQEQLRPLSQQIPTSLQDQDELQSVPLLPTPTQEQEQLQLLPPTPPQQSNNNKRKAMEDGLSPDRTRPRYNGITTMV 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16664904 16666640 - ClCG04G004320.1 Cla04g00444 270672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00444 264 CDD REC_typeA_ARR 18 148 - -
Cla04g00444 264 Pfam Response regulator receiver domain 18 144 IPR001789 GO:0000160
Cla04g00444 264 MobiDBLite consensus disorder prediction 215 264 - -
Cla04g00444 264 MobiDBLite consensus disorder prediction 159 192 - -
Cla04g00444 264 Gene3D - 17 249 - -
Cla04g00444 264 MobiDBLite consensus disorder prediction 215 243 - -
Cla04g00444 264 SUPERFAMILY CheY-like 14 148 IPR011006 -
Cla04g00444 264 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR9-LIKE 11 262 - -
Cla04g00444 264 ProSiteProfiles Response regulatory domain profile. 17 153 IPR001789 GO:0000160
Cla04g00444 264 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 262 IPR045279 GO:0009736
Cla04g00444 264 SMART REC_2 16 149 IPR001789 GO:0000160
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00444 Cla10g01535 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00444 Cla-Chr4:16664904 Cla10g01535 Cla-Chr10:30671838 2.60E-75 dispersed
Cla04g00444 Cla-Chr4:16664904 Cla06g01631 Cla-Chr6:29836743 1.89E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60889 PF00072 Response_reg 1.30E-18 CL0304 Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00444 K14492 - csv:101220999 431.024