Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00481 ATGGTAATTTTGAAAAGTATTGGGGTATTTTATGTATTTTTTTATAGTTTGAGAGGCACAGCCTACTGCTGGGGCTCTCGCTTCCTCTTCTCATCAGTCATCAGTTCTGTTTCTTTTTCCCGCCATTTCAAGCCTCGCCTAAGCCTTTGCTCTCTCCTTCACACACACTTCTTTTTTCGCTTTGTCACGATCTTAAATCTCCAAACACCGAAGAAGATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGACGTAGCACAGAATCTTAAGAAATTGGTTACAGAACAGGACTGCCCTCATTTGCTCTTCTATGGCCCCTCCGGTTCCGGAAAGAAAACCCTAGTCATGGCCCTTATCCGGCAGATGTTCGGAGCCAGTGCGGATAAGGTTACAGAACAGGACTGCCCTCATTTGCTCTTCTATGGCCCCTCCGGTTCCGGAAAGAAAACCCTAGTCATGGCCCTTATCCGGCAGATGTTCGGAGCCAGTGCGGATAAGGTGAAGGTGGAGAACAAAACGTGGAAAGTTGATGCTGGAGCTAGAACTATTGATATAGAGTTGACCACCTTATCAAGTACAAACCATGTTGAGCTCACTCCCAGCGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAAGAAATGGCAAAAAACAGACCAATTGACTCCAAAGGGAAAAGGGGGCATAAAGTGTTGGTTCTAAATGACGTCGACAAACTATCAAGAGAGGCCCAACACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATACTTTGCTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGTTCTCGCTGCCTAAATGTGCGGATAAATGGACCAACAGAGGAGCAGATTGTCAGGGTACTTGAGTTCATTGGCAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGTATTGCAGAAAAATCAAATCGGAGTTTGAGGAGAGCTATACTATCATTCGAGACTTGTCGTGTTCAACAGTATCCTTTTGTCAGTACCCAGGCAATTCCACCGATGGATTGGGAGGAGTACATCACTGAGATAGCATCTGACATAATGAAGGAGCAGAGTCCCAAGAGACTATTCCAGGTTCGTGGGAAGGTATATGAGCTACTGGTTAATTGTATCCCACCGGAGATCATATTGAAGAGGCTGCTTTATGAGCTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGAACACAGGATGCGCCTTGGACAGAAAGCCATCTTCCACATTGAAGGTAAATGTATTTGCTTTTGTGGCGAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAACATTCGGCTAAGGAGAAGAAAAGTAGACCTTGAAGTTAGGCTGTCTCAGTTCATTCAAGAAATGCCCTTGTAA 1467 43.97 MVILKSIGVFYVFFYSLRGTAYCWGSRFLFSSVISSVSFSRHFKPRLSLCSLLHTHFFFRFVTILNLQTPKKMLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGASADKVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGASADKVKVENKTWKVDAGARTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINGPTEEQIVRVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSTQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKVYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEGKCICFCGEVHEHIQDFPHFNIRLRRRKVDLEVRLSQFIQEMPL 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17791018 17796850 + ClCG04G004690.1 Cla04g00481 270709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00481 488 SMART AAA_5 142 301 IPR003593 -
Cla04g00481 488 PANTHER REPLICATION FACTOR C SUBUNIT 3 74 134 - -
Cla04g00481 488 Gene3D - 361 451 - -
Cla04g00481 488 PANTHER REPLICATION FACTOR C SUBUNIT 3 138 447 - -
Cla04g00481 488 Gene3D - 299 359 - -
Cla04g00481 488 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 74 134 - -
Cla04g00481 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 346 IPR027417 -
Cla04g00481 488 CDD AAA 144 290 - -
Cla04g00481 488 Pfam DNA polymerase III, delta subunit 146 296 - -
Cla04g00481 488 Pfam Rad17 P-loop domain 72 128 - -
Cla04g00481 488 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 138 447 - -
Cla04g00481 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 133 IPR027417 -
Cla04g00481 488 Gene3D - 141 298 IPR027417 -
Cla04g00481 488 Gene3D - 72 140 IPR027417 -
Cla04g00481 488 SUPERFAMILY post-AAA+ oligomerization domain-like 360 446 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00481 Cla-Chr4:17791018 Cla05g00273 Cla-Chr5:2461329 6.24E-39 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00481 K10756 - csv:101221072 612.838