Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00515 ATGGACTTCTTACAGTCTCTGGATCCTCAAATCCTTCTAGGTTTGGCTGTGGCTGTTTTAGCCCTTGCCGTTGGTGCTTTCTATGTATTATCCTCGTCCAAAAAAAGCAAATCCAGAGGTTGCTTGAATCCAGAGGTTTTCAAGGAGTTTAAACTTGTCAAGCGCCTGCAGCTGAGCCATAATGTGGCGAAGTTTACATTTACACTCCCGAATCCTACTTCAGTTCTAGGTCTTCCCATTGGACAACATATAAGTTGCAGGTCTGCTAACTGGAAATGGTTTTCGAAATCTTCCTTGGGTTTGAGTGGGGATGCATGCCTCATTGCCTCGGGCAAGGATGGCCAAGGTGAAGAGGTTATCAAACCGTACACACCTATTACTTTGGATTCTGATGTTGGATATTTTGAATTGGTCATAAAGATGTATCCTCAAGGAAGGATGTCACACCATTTCCGCCAGATGCGTGTAGGCGATTTTCTTGCTGTAAAGGGGCCCAAGGGGCGTTTCAGGTATCAACCCGGCGAGGTCAGAGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACGCCTATGTATCAAGTTGCTCGAGCAATATTAGAAAATCCAAATGACAAAACGAAGGTACATCTCATTTATGCCAATGTCACCTATGAGGACATTCTCTTAAAGGAGGAGTTGGATCTTCTTGCCAAAAGATTTTACACGATAGATGTGAACTTTGACAAATCTAGTGAATTAAATTGGACCTCTTGTATAGAGATGTCCAAGGGGCGGGGACCATTGAGCCAATGGAGAGAAAATTCTCCCTGCTCCCTCTCCCATTCCTGGTCTAATCGGAGATTCCCTGCCTTGTTTGTGTTTGGAGCGGGTCCTTGCAGGCCTCCTGAAGCGTGGGATGGAGGTGTCGGATTCGTATCAAAGGAGATGATTCAAGCCCACTGCCCTGCTCCTGCTTCTGATATTCAGCAAATGAAGTTCTTCCATGTGCACGATAACATGTTGGATCACATTCTTGTTTTCTCACGAATTCTAAGGTGTGGACCACCACCAATGAACAAGGCCATGGCTGCTCATCTGGAAGATCTTGGATATACACCTGAGATGCTGTTCATGTTCTGA 1119 45.58 MDFLQSLDPQILLGLAVAVLALAVGAFYVLSSSKKSKSRGCLNPEVFKEFKLVKRLQLSHNVAKFTFTLPNPTSVLGLPIGQHISCRSANWKWFSKSSLGLSGDACLIASGKDGQGEEVIKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGDFLAVKGPKGRFRYQPGEVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTYEDILLKEELDLLAKRFYTIDVNFDKSSELNWTSCIEMSKGRGPLSQWRENSPCSLSHSWSNRRFPALFVFGAGPCRPPEAWDGGVGFVSKEMIQAHCPAPASDIQQMKFFHVHDNMLDHILVFSRILRCGPPPMNKAMAAHLEDLGYTPEMLFMF 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18630609 18636727 + ClCG04G005060.2 Cla04g00515 270743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00515 372 Gene3D - 163 372 IPR039261 -
Cla04g00515 372 PANTHER NADH-CYTOCHROME B5 REDUCTASE 95 231 IPR001834 GO:0016491
Cla04g00515 372 CDD cyt_b5_reduct_like 50 372 - -
Cla04g00515 372 PANTHER NADH-CYTOCHROME B5 REDUCTASE 293 325 - -
Cla04g00515 372 Pfam Oxidoreductase NAD-binding domain 181 233 IPR001433 GO:0016491
Cla04g00515 372 Pfam Oxidoreductase FAD-binding domain 50 87 IPR008333 -
Cla04g00515 372 Pfam Oxidoreductase FAD-binding domain 107 171 IPR008333 -
Cla04g00515 372 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 89 - -
Cla04g00515 372 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 172 IPR017927 GO:0016491
Cla04g00515 372 PANTHER NADH-CYTOCHROME B5 REDUCTASE 95 231 - -
Cla04g00515 372 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 89 IPR001834 GO:0016491
Cla04g00515 372 PANTHER NADH-CYTOCHROME B5 REDUCTASE 293 325 IPR001834 GO:0016491
Cla04g00515 372 SUPERFAMILY Riboflavin synthase domain-like 41 173 IPR017938 -
Cla04g00515 372 PANTHER NADH-CYTOCHROME B5 REDUCTASE 342 372 - -
Cla04g00515 372 Gene3D Translation factors 40 162 - -
Cla04g00515 372 PRINTS Cytochrome B5 reductase signature 157 171 - -
Cla04g00515 372 PRINTS Cytochrome B5 reductase signature 76 87 - -
Cla04g00515 372 PRINTS Cytochrome B5 reductase signature 180 199 - -
Cla04g00515 372 PRINTS Cytochrome B5 reductase signature 218 229 - -
Cla04g00515 372 PANTHER NADH-CYTOCHROME B5 REDUCTASE 342 372 IPR001834 GO:0016491
Cla04g00515 372 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 158 371 IPR039261 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00515 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - csv:101212569 451.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00515 Cla-Chr4:18630609 Cla10g01589 Cla-Chr10:31371780 1.92E-140 dispersed
Cla04g00515 Cla-Chr4:18630609 Cla03g00880 Cla-Chr3:12117206 3.45E-34 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g00023 . 1 134 NADPH P450 reductases AT5G53560 79.1 3.4e-59 224.6
Cla05g00353 . 106 238 NADPH P450 reductases AT5G53560 68.4 1.5e-51 199.1
Cla06g00745 . 31 134 NADPH P450 reductases AT5G53560 67.3 4.8e-37 151.0
Cla05g00353 . 106 237 NADPH P450 reductases AT5G48810 64.9 8.2e-48 186.8
Cla01g00023 . 1 134 NADPH P450 reductases AT5G48810 59.6 6.5e-45 177.2
Cla05g00353 . 127 238 NADPH P450 reductases AT2G32720 84.8 7.6e-51 196.8
Cla06g00745 . 3 134 NADPH P450 reductases AT2G32720 69.2 4.3e-46 181.0
Cla01g00023 . 22 133 NADPH P450 reductases AT2G32720 67.0 2.1e-40 162.2
Cla10g01589 . 2 280 NADPH P450 reductases AT5G17770 78.1 7.9e-127 450.3
Cla02g02350 . 55 327 NADPH P450 reductases AT5G17770 73.3 3.7e-116 414.8
Cla04g00515 . 2 372 NADPH P450 reductases AT5G17770 59.6 8.8e-110 393.7
Cla01g00023 . 1 134 NADPH P450 reductases AT5G53560 79.1 3.4e-59 224.6
Cla05g00353 . 106 238 NADPH P450 reductases AT5G53560 68.4 1.5e-51 199.1
Cla06g00745 . 31 134 NADPH P450 reductases AT5G53560 67.3 4.8e-37 151.0
Cla05g00353 . 106 237 NADPH P450 reductases AT5G48810 64.9 8.2e-48 186.8
Cla01g00023 . 1 134 NADPH P450 reductases AT5G48810 59.6 6.5e-45 177.2
Cla05g00353 . 127 238 NADPH P450 reductases AT2G32720 84.8 7.6e-51 196.8
Cla06g00745 . 3 134 NADPH P450 reductases AT2G32720 69.2 4.3e-46 181.0
Cla01g00023 . 22 133 NADPH P450 reductases AT2G32720 67.0 2.1e-40 162.2
Cla10g01589 . 2 280 NADPH P450 reductases AT5G17770 78.1 7.9e-127 450.3
Cla02g02350 . 55 327 NADPH P450 reductases AT5G17770 73.3 3.7e-116 414.8
Cla04g00515 . 2 372 NADPH P450 reductases AT5G17770 59.6 8.8e-110 393.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g00515 Cla_Chr04 FPKM 8.994113 7.633169 11.288198 11.035778 18.303318 17.264309 16.874445 15.203594 15.144801 14.1848