Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00515 ATGGACTTCTTACAGTCTCTGGATCCTCAAATCCTTCTAGGTTTGGCTGTGGCTGTTTTAGCCCTTGCCGTTGGTGCTTTCTATGTATTATCCTCGTCCAAAAAAAGCAAATCCAGAGGTTGCTTGAATCCAGAGGTTTTCAAGGAGTTTAAACTTGTCAAGCGCCTGCAGCTGAGCCATAATGTGGCGAAGTTTACATTTACACTCCCGAATCCTACTTCAGTTCTAGGTCTTCCCATTGGACAACATATAAGTTGCAGGTCTGCTAACTGGAAATGGTTTTCGAAATCTTCCTTGGGTTTGAGTGGGGATGCATGCCTCATTGCCTCGGGCAAGGATGGCCAAGGTGAAGAGGTTATCAAACCGTACACACCTATTACTTTGGATTCTGATGTTGGATATTTTGAATTGGTCATAAAGATGTATCCTCAAGGAAGGATGTCACACCATTTCCGCCAGATGCGTGTAGGCGATTTTCTTGCTGTAAAGGGGCCCAAGGGGCGTTTCAGGTATCAACCCGGCGAGGTCAGAGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACGCCTATGTATCAAGTTGCTCGAGCAATATTAGAAAATCCAAATGACAAAACGAAGGTACATCTCATTTATGCCAATGTCACCTATGAGGACATTCTCTTAAAGGAGGAGTTGGATCTTCTTGCCAAAAGATTTTACACGATAGATGTGAACTTTGACAAATCTAGTGAATTAAATTGGACCTCTTGTATAGAGATGTCCAAGGGGCGGGGACCATTGAGCCAATGGAGAGAAAATTCTCCCTGCTCCCTCTCCCATTCCTGGTCTAATCGGAGATTCCCTGCCTTGTTTGTGTTTGGAGCGGGTCCTTGCAGGCCTCCTGAAGCGTGGGATGGAGGTGTCGGATTCGTATCAAAGGAGATGATTCAAGCCCACTGCCCTGCTCCTGCTTCTGATATTCAGCAAATGAAGTTCTTCCATGTGCACGATAACATGTTGGATCACATTCTTGTTTTCTCACGAATTCTAAGGTGTGGACCACCACCAATGAACAAGGCCATGGCTGCTCATCTGGAAGATCTTGGATATACACCTGAGATGCTGTTCATGTTCTGA 1119 45.58 MDFLQSLDPQILLGLAVAVLALAVGAFYVLSSSKKSKSRGCLNPEVFKEFKLVKRLQLSHNVAKFTFTLPNPTSVLGLPIGQHISCRSANWKWFSKSSLGLSGDACLIASGKDGQGEEVIKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGDFLAVKGPKGRFRYQPGEVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTYEDILLKEELDLLAKRFYTIDVNFDKSSELNWTSCIEMSKGRGPLSQWRENSPCSLSHSWSNRRFPALFVFGAGPCRPPEAWDGGVGFVSKEMIQAHCPAPASDIQQMKFFHVHDNMLDHILVFSRILRCGPPPMNKAMAAHLEDLGYTPEMLFMF 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18630609 18636727 + ClCG04G005060.2 Cla04g00515 270743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00515 372 Gene3D - 163 372 IPR039261 -
Cla04g00515 372 PANTHER NADH-CYTOCHROME B5 REDUCTASE 95 231 IPR001834 GO:0016491
Cla04g00515 372 CDD cyt_b5_reduct_like 50 372 - -
Cla04g00515 372 PANTHER NADH-CYTOCHROME B5 REDUCTASE 293 325 - -
Cla04g00515 372 Pfam Oxidoreductase NAD-binding domain 181 233 IPR001433 GO:0016491
Cla04g00515 372 Pfam Oxidoreductase FAD-binding domain 50 87 IPR008333 -
Cla04g00515 372 Pfam Oxidoreductase FAD-binding domain 107 171 IPR008333 -
Cla04g00515 372 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 89 - -
Cla04g00515 372 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 172 IPR017927 GO:0016491
Cla04g00515 372 PANTHER NADH-CYTOCHROME B5 REDUCTASE 95 231 - -
Cla04g00515 372 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 89 IPR001834 GO:0016491
Cla04g00515 372 PANTHER NADH-CYTOCHROME B5 REDUCTASE 293 325 IPR001834 GO:0016491
Cla04g00515 372 SUPERFAMILY Riboflavin synthase domain-like 41 173 IPR017938 -
Cla04g00515 372 PANTHER NADH-CYTOCHROME B5 REDUCTASE 342 372 - -
Cla04g00515 372 Gene3D Translation factors 40 162 - -
Cla04g00515 372 PRINTS Cytochrome B5 reductase signature 157 171 - -
Cla04g00515 372 PRINTS Cytochrome B5 reductase signature 76 87 - -
Cla04g00515 372 PRINTS Cytochrome B5 reductase signature 180 199 - -
Cla04g00515 372 PRINTS Cytochrome B5 reductase signature 218 229 - -
Cla04g00515 372 PANTHER NADH-CYTOCHROME B5 REDUCTASE 342 372 IPR001834 GO:0016491
Cla04g00515 372 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 158 371 IPR039261 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00515 Cla-Chr4:18630609 Cla10g01589 Cla-Chr10:31371780 1.92E-140 dispersed
Cla04g00515 Cla-Chr4:18630609 Cla03g00880 Cla-Chr3:12117206 3.45E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00515 K00326 - csv:101212569 451.44