Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00523 ATGGCAGAATTAGATCAAGAAGTAGTTGACCCTCCTCCCTTCTTTCTCTGTCCCATCTCTTTGCAAATCATGAAAGACCCCGTCACGATCACCTCCGGCATAACCTACGACCGAGAAAACATTGAGAAATGGTTGTTTTCCGACAAACACAAGACGTGCCCTGTCTCACAGGTTGTCTTGTCGGATTTCAACATCACTCCCAACCATACTTTAAGACGAGTTATTCAAGCTTGGTGCACAGTCAACGCTTGTAGTGGCGTCGAGAGGATGCCAACACCCAAACCTCCGGTTGACCGGAAACAAGTCGTTAGGATTCTTGCTGATGCCAAGTTATCTCCTTTCTCTCAGCAGAATTGTCTTCGTCGTCTTCGATCTATCGCTGCGGCGAATGAAACTAATAAACGTTGCATGGAATCGGCTGGAGCTGTGGAGTTCTTGGCTGGGCTTGTGTGTAGTTCTACAACCAACGTGGAGTCTGGCTTTGAAGATTACGCGTTTGACGACATGTCGGCAAACTTGGGGGATGAGGCTTTGAGCATTCTTCACAAACTCCAGATCTCCGAATCCGCTCTCAAATTTCTGCTCTCCAACAATGGCGGCATCTTCATCTCCACCTTAACCAAAATCTTGCAAAACCGAAGCTATTCCTCCCGAGCGTATTCAATAATGCTTCTCAATTCAATGTTCGAAGTCGCAGATCAGGTTCAAATCCTCAGTCTCACCGCCGATTTCTTCATCGAAATCGTCCAAATCCTTAAAGATCAGATCTCCAAACAAGCCTCGAAATCGGCATTGAAATTGCTAATCGGTGTCTGTTCGAGTTCCAGAAACAGAGTAAAGGCGGTTCAAGCCGGTGCGGTTCCGGTTCTGATCGATCTCCTTCTCGATCTCGATTCGTCGGAGAAGCGTTTGTGCGAGATGATTCTCGTGGTGCTTGATCTGCTGTGTGGTTGCGCCGATGGCAGGGCGGAGCTGTTGAATCACGCGGCGGGGATCGCCGTCGTGTCGAAGAAGATTTTGAGAGTTTCGTCGCTCGGAAGTGAGAAGGCGGTTGGGATCTTATGGTCCGTTGCGAGATTCTCGGCGAGCCAAACCGTCATTCAGGAAATGCTGCGGCTGGGAGTTGTGACGAAGCTTTGTTTTCTGCTTCAAGTGGTCGACGCCGGAGCGAAAGCGAAAGAGAAAGCTAAAGAGATTCTGAAGCTTCATGGTCGGCCATGGCGGAATTCTTCTTGTTTGCCTTCGAGTCTGCGATCATCTTATCCACAACATTAG 1275 48.78 MAELDQEVVDPPPFFLCPISLQIMKDPVTITSGITYDRENIEKWLFSDKHKTCPVSQVVLSDFNITPNHTLRRVIQAWCTVNACSGVERMPTPKPPVDRKQVVRILADAKLSPFSQQNCLRRLRSIAAANETNKRCMESAGAVEFLAGLVCSSTTNVESGFEDYAFDDMSANLGDEALSILHKLQISESALKFLLSNNGGIFISTLTKILQNRSYSSRAYSIMLLNSMFEVADQVQILSLTADFFIEIVQILKDQISKQASKSALKLLIGVCSSSRNRVKAVQAGAVPVLIDLLLDLDSSEKRLCEMILVVLDLLCGCADGRAELLNHAAGIAVVSKKILRVSSLGSEKAVGILWSVARFSASQTVIQEMLRLGVVTKLCFLLQVVDAGAKAKEKAKEILKLHGRPWRNSSCLPSSLRSSYPQH 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18788121 18790691 + ClCG04G005140.1 Cla04g00523 270751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00523 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 87 IPR013083 -
Cla04g00523 424 SUPERFAMILY RING/U-box 3 84 - -
Cla04g00523 424 CDD RING-Ubox_PUB 15 57 IPR045210 -
Cla04g00523 424 ProSiteProfiles U-box domain profile. 10 85 IPR003613 GO:0004842|GO:0016567
Cla04g00523 424 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
Cla04g00523 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 8 422 - -
Cla04g00523 424 SMART Ubox_2 14 78 IPR003613 GO:0004842|GO:0016567
Cla04g00523 424 Gene3D - 99 406 IPR011989 -
Cla04g00523 424 PANTHER WDSAM1 PROTEIN 8 422 IPR045185 GO:0061630
Cla04g00523 424 SUPERFAMILY ARM repeat 103 389 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02177 Cla-Chr2:36861764 Cla04g00523 Cla-Chr4:18788121 1.19E-127 dispersed
Cla04g00523 Cla-Chr4:18788121 Cla05g00279 Cla-Chr5:2516025 2.92E-70 dispersed
Cla11g00802 Cla-Chr11:11835698 Cla04g00523 Cla-Chr4:18788121 4.22E-10 dispersed
Cla04g00523 Cla-Chr4:18788121 Cla10g01740 Cla-Chr10:33280755 1.45E-154 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00523 - - cmo:103485961 703.745