Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00532 ATGATAAATTACTGCTTCTTCTTGGTCGATTTCCAGAGATTAACCATGATTAATGCTATCAAGGCTGCGATCGGCGATGCCGTTCTCACTTCCATGTGGATTTTCTGTGCTTCGTCTCTTGGGGTTCTCACTTCCGTCCTGTCCTCGGCAGCCGGTGTTTATGGCCTTACGCTTCACCCGCTTCTTATCGTTACTACTCTTGTCTTCCTCCTTGTTTTCATTTTTAATATAATTGGTGCTGCTTTGGGTGGGGCTAGCTTTAATCCCACTGGTACTGCTGCTTTCTATGCTGCCGGCGTTGTTCCAACCTCTCTCTTCGCCATGGCTATCCGTTTCCCTGCTCAGGCAGCTGGTGCGGTTGCTGGTGCCCTGGCGATCAAGGAGGTGATGCCTATACAATACAAACACATGCTTGGTGGACCTTCTTTAAAAGTTGACATTCATTCTGGAGCTACAGCTGAAGGAATTTTGACCTTTATAATCAGTTTTGCTGTTCTTCTAATTGTAGTCAGGGGTCCTTCCAGCCCAATTATTAAAACATTGTTGCTGGCAATGACCACCGTAGCGTTAATTGTTGCTGGTTCTAGTTACACAGGACCTTCCATGAATCCTGCAAATGCGTTCGGATGGGCATATATAAACAACAGGCATGATACATGGGAGCAGTTGTACGTATACTGGATCGCCCCCTTCATAGGAGCGATTTTGGCTGCTTGGCTTTTCAGAATCATCTTCCCACCACCCCCCCCAGCCCCAGCCAAGCAGAAGAAAGCTTGA 777 47.23 MINYCFFLVDFQRLTMINAIKAAIGDAVLTSMWIFCASSLGVLTSVLSSAAGVYGLTLHPLLIVTTLVFLLVFIFNIIGAALGGASFNPTGTAAFYAAGVVPTSLFAMAIRFPAQAAGAVAGALAIKEVMPIQYKHMLGGPSLKVDIHSGATAEGILTFIISFAVLLIVVRGPSSPIIKTLLLAMTTVALIVAGSSYTGPSMNPANAFGWAYINNRHDTWEQLYVYWIAPFIGAILAAWLFRIIFPPPPPAPAKQKKA 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18897371 18902275 - ClCG04G005220.2 Cla04g00532 270760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00532 258 Pfam Major intrinsic protein 16 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00532 258 SUPERFAMILY Aquaporin-like 12 254 IPR023271 -
Cla04g00532 258 Gene3D Glycerol uptake facilitator protein. 12 250 IPR023271 -
Cla04g00532 258 PRINTS Major intrinsic protein family signature 224 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00532 258 PRINTS Major intrinsic protein family signature 107 126 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00532 258 PRINTS Major intrinsic protein family signature 153 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00532 258 PRINTS Major intrinsic protein family signature 184 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00532 258 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00532 258 PRINTS Major intrinsic protein family signature 68 92 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00532 258 PANTHER AQUAPORIN SIP1-1 18 257 - -
Cla04g00532 258 PANTHER AQUAPORIN SIP1-1 18 257 IPR044222 GO:0015250
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00532 Cla-Chr4:18897371 Cla10g01580 Cla-Chr10:31273532 8.06E-31 dispersed
Cla04g00532 Cla-Chr4:18897371 Cla02g02062 Cla-Chr2:35637260 1.39E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00532 K09875 - csv:101220534 399.053