Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla04g00533 | ATGAACGACTTGATGACCAAATCGTTCACCAGCTATGTGGATCTGAAGAAGGCAGCCATGAAAGATCTCGACCTCGAAGCTGGTTTAGAAATGCCATCGTCCGCTACCGGAGACAACGGTGACATGGGTCTTTTTCTTGAAGAAGCTGAGAAGGTGAAAATGGAGATGGGTTCAATTAGAGAGATTTTAGTTAAACTCCAACAAGCTAATGAGGAGACCAAATCTGCTCACAAACCCGAAACTCTCAAATCGCTTCGTAATACGATCAATGTCGACATTGTCACCGTCCTGAAAAAGGCGCGATCGATCCGATCTCAGCTTGAGGAAATGGACCGTGCCAATGCTGCAAAGAAACGTCTTTCTGGCAGCAAAGAAGGCACTGCCATTTACCGGACGAGAATTGCGGTGACAAACGGGCTGCGGAAGAAGCTAAAGGAATTGATGATGGAGTTCCAGAGCTTGAGGCAGAGGATGATGACGGAGTACAAGGAAACGGTCGGGCGAAGGTATTTCACGGTGACGGGGGAGCATCCGGAGGAGGAGGTGATAGAGAAGATAATATCCAATGGAGGAGAGGAGTTTTTGGGGAGGGCGATAGAGGAGCACGGGCAGGGGAAAGTGGCAGAGACGGTGGTGGAGATACAAGACCGACACGGGGCGGCGAAGGAGATAGAGAAGAGTTTGCTAGAGCTACACCAAGTGTTTTTGGATATGGCAGTGATGGTTGAAGCACAAGGGGAAAAAATGGATGATATTGAACATCATGTGATGAATGCTTCACAATATGTTAGGGATGGGACTAAGGATTTGAAGACTGCAAAAGATTTGCAAAGGAACAGTAGGAAATGTATGTGTTTTGGGATTTTTCTTTTGCTTCTGATTATTTTGGTTGTTGTTATTCCTATTGCTGTTAGTTTTGGAAGTTCTTGA | 930 | 46.13 | MNDLMTKSFTSYVDLKKAAMKDLDLEAGLEMPSSATGDNGDMGLFLEEAEKVKMEMGSIREILVKLQQANEETKSAHKPETLKSLRNTINVDIVTVLKKARSIRSQLEEMDRANAAKKRLSGSKEGTAIYRTRIAVTNGLRKKLKELMMEFQSLRQRMMTEYKETVGRRYFTVTGEHPEEEVIEKIISNGGEEFLGRAIEEHGQGKVAETVVEIQDRHGAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVMNASQYVRDGTKDLKTAKDLQRNSRKCMCFGIFLLLLIILVVVIPIAVSFGSS | 309 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 18913942 | 18915053 | + | ClCG04G005230.1 | Cla04g00533 | 270761 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla04g00533 | 309 | SUPERFAMILY | t-snare proteins | 41 | 266 | IPR010989 | GO:0016020|GO:0016192 | |
| Cla04g00533 | 309 | SMART | tSNARE_6 | 206 | 273 | IPR000727 | - | |
| Cla04g00533 | 309 | CDD | SNARE_syntaxin1-like | 210 | 272 | - | - | |
| Cla04g00533 | 309 | SMART | SynN_4 | 37 | 163 | IPR006011 | GO:0016020 | |
| Cla04g00533 | 309 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 211 | 273 | IPR000727 | - | |
| Cla04g00533 | 309 | PANTHER | SYNTAXIN | 4 | 302 | IPR045242 | - | |
| Cla04g00533 | 309 | ProSitePatterns | Syntaxin / epimorphin family signature. | 217 | 257 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Cla04g00533 | 309 | PANTHER | SYNTAXIN-RELATED PROTEIN KNOLLE | 4 | 302 | - | - | |
| Cla04g00533 | 309 | Gene3D | - | 37 | 166 | - | - | |
| Cla04g00533 | 309 | CDD | SynN | 42 | 198 | IPR006011 | GO:0016020 | |
| Cla04g00533 | 309 | Gene3D | - | 204 | 307 | - | - | |
| Cla04g00533 | 309 | Pfam | Syntaxin | 45 | 246 | IPR006011 | GO:0016020 | |
| Cla04g00533 | 309 | Pfam | SNARE domain | 248 | 299 | IPR000727 | - | |
| Cla04g00533 | 309 | Coils | Coil | 137 | 157 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g01917 | Cla-Chr1:33882841 | Cla04g00533 | Cla-Chr4:18913942 | 4.53E-67 | dispersed | |
| Cla04g00533 | Cla-Chr4:18913942 | Cla10g01736 | Cla-Chr10:33181092 | 7.21E-74 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla04g00533 | K08486 | - | csv:101220775 | 563.918 |