Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00533 ATGAACGACTTGATGACCAAATCGTTCACCAGCTATGTGGATCTGAAGAAGGCAGCCATGAAAGATCTCGACCTCGAAGCTGGTTTAGAAATGCCATCGTCCGCTACCGGAGACAACGGTGACATGGGTCTTTTTCTTGAAGAAGCTGAGAAGGTGAAAATGGAGATGGGTTCAATTAGAGAGATTTTAGTTAAACTCCAACAAGCTAATGAGGAGACCAAATCTGCTCACAAACCCGAAACTCTCAAATCGCTTCGTAATACGATCAATGTCGACATTGTCACCGTCCTGAAAAAGGCGCGATCGATCCGATCTCAGCTTGAGGAAATGGACCGTGCCAATGCTGCAAAGAAACGTCTTTCTGGCAGCAAAGAAGGCACTGCCATTTACCGGACGAGAATTGCGGTGACAAACGGGCTGCGGAAGAAGCTAAAGGAATTGATGATGGAGTTCCAGAGCTTGAGGCAGAGGATGATGACGGAGTACAAGGAAACGGTCGGGCGAAGGTATTTCACGGTGACGGGGGAGCATCCGGAGGAGGAGGTGATAGAGAAGATAATATCCAATGGAGGAGAGGAGTTTTTGGGGAGGGCGATAGAGGAGCACGGGCAGGGGAAAGTGGCAGAGACGGTGGTGGAGATACAAGACCGACACGGGGCGGCGAAGGAGATAGAGAAGAGTTTGCTAGAGCTACACCAAGTGTTTTTGGATATGGCAGTGATGGTTGAAGCACAAGGGGAAAAAATGGATGATATTGAACATCATGTGATGAATGCTTCACAATATGTTAGGGATGGGACTAAGGATTTGAAGACTGCAAAAGATTTGCAAAGGAACAGTAGGAAATGTATGTGTTTTGGGATTTTTCTTTTGCTTCTGATTATTTTGGTTGTTGTTATTCCTATTGCTGTTAGTTTTGGAAGTTCTTGA 930 46.13 MNDLMTKSFTSYVDLKKAAMKDLDLEAGLEMPSSATGDNGDMGLFLEEAEKVKMEMGSIREILVKLQQANEETKSAHKPETLKSLRNTINVDIVTVLKKARSIRSQLEEMDRANAAKKRLSGSKEGTAIYRTRIAVTNGLRKKLKELMMEFQSLRQRMMTEYKETVGRRYFTVTGEHPEEEVIEKIISNGGEEFLGRAIEEHGQGKVAETVVEIQDRHGAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVMNASQYVRDGTKDLKTAKDLQRNSRKCMCFGIFLLLLIILVVVIPIAVSFGSS 309
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 18913942 18915053 + ClCG04G005230.1 Cla04g00533 270761
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00533 309 SUPERFAMILY t-snare proteins 41 266 IPR010989 GO:0016020|GO:0016192
Cla04g00533 309 SMART tSNARE_6 206 273 IPR000727 -
Cla04g00533 309 CDD SNARE_syntaxin1-like 210 272 - -
Cla04g00533 309 SMART SynN_4 37 163 IPR006011 GO:0016020
Cla04g00533 309 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Cla04g00533 309 PANTHER SYNTAXIN 4 302 IPR045242 -
Cla04g00533 309 ProSitePatterns Syntaxin / epimorphin family signature. 217 257 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cla04g00533 309 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 4 302 - -
Cla04g00533 309 Gene3D - 37 166 - -
Cla04g00533 309 CDD SynN 42 198 IPR006011 GO:0016020
Cla04g00533 309 Gene3D - 204 307 - -
Cla04g00533 309 Pfam Syntaxin 45 246 IPR006011 GO:0016020
Cla04g00533 309 Pfam SNARE domain 248 299 IPR000727 -
Cla04g00533 309 Coils Coil 137 157 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01917 Cla-Chr1:33882841 Cla04g00533 Cla-Chr4:18913942 4.53E-67 dispersed
Cla04g00533 Cla-Chr4:18913942 Cla10g01736 Cla-Chr10:33181092 7.21E-74 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00533 K08486 - csv:101220775 563.918