Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00589 ATGGCTTCAAGACAAGTTCTTCCCCAACAAATCAGAGGCGAGGCAGCGATCGGTGGAGGAAAACAGGCAAAGGGCGCAGCGGCGGCAGATGCTAGGAACCGCCGAGCATTGGGTGATATTGGGAATCTGGTAACTGTTCGAGGAGTTGACGCAAAGGCAAATCGTCCTATTACAAGGAGTTTCTGTGCTCAGTTGCTTGCTAATGCCCAAGCTGCTGCAAAAGCTGAAAACAATAAGAAACAAGTACCTGTTAATGTAGATGGGGCTGCTCCCATTCTTGATGCTGGTGTTATGGCTGTTAAGAAAGCAGGAGCTCCCAAGCCAGCACATAAGAAAGTTGCAATTAAACCAACATCGGAGGTTATCGAGATAAGCTCGGACACGGTCGAAAAAGTTAAAGCCAAGGAAGTCAAATGTGCAAACAAGAAAAAGGAAGGAGAAGGGCCCTCAAAGAAGAAAGCACAGACTCTCACTTCAGTCCTAACTGCTAGAAGCAAGGCTGCCTGTGGTGTATCCAAGAAACCTAAAGAGGAGATTTTTGATATTGATGCTGCAGATGTTGGTAATGAGTTGGCAGCAGTTGAATATGTTGAGGACATTTACACTTTCTATAAAGAAGCCGAGAATGAGAGCAGACCTCATGACTATATGGATTCACAACCTGAGATAAACTCGACCATGAGGGCTATTTTGGTGGATTGGTTGGTTGATGTCCACAACAAATTCGAACTTTCGCCCGAAACTTTCTACCTCACGATCAATATAATCGATCGATTCCTTGCGACAAAAATAGTTCCAAGAAGGGAATTGCAATTGGTGGGCATTGGAGCCATGCTTATAGCCTCCAAATATGAAGAAATTTGGGCGCCTGAGGTAAATGACTTTGTGTGTCTTTCGGATAGAGCTTACACTCATGAACAGATACTAGTGATGGAGAAAAAAATACTTGGCAAGTTGGAATGGACCTTGACTGTTCCTACACCCTACGTTTTCCTTGCTCGATTCATCAAGGCGTCCAAGGACTCCAATCACGAGATGGAAAATCTGGTTTATTTTCTGGCTGAACTTGGTATAATGCATTACAATACGGCAATGATGTATTGCCCGTCCATGATTGCCGCCTCGGCAGTCTATGCGGCTCGATGCACGCTGAAGAAAACCCCTGCTTGGGATGACACCCTCAAACTGCACACTGGTTTCTCAGAACCTCAGATAATTGACTGTGCAAAACTTCTGGTGGGGTTCCATGGGGTAGCAGAGAAGAACAAGCTTCAAGTAATATACCGAAAGTACTCGAGCTCCGAGCGGGGAGCGGTAGCATTGCTTCAGCCAGCCAAAGCTCTGTTGGCTCCCAATGGTGGCGGTGTCCATTGA 1374 46.0 MASRQVLPQQIRGEAAIGGGKQAKGAAAADARNRRALGDIGNLVTVRGVDAKANRPITRSFCAQLLANAQAAAKAENNKKQVPVNVDGAAPILDAGVMAVKKAGAPKPAHKKVAIKPTSEVIEISSDTVEKVKAKEVKCANKKKEGEGPSKKKAQTLTSVLTARSKAACGVSKKPKEEIFDIDAADVGNELAAVEYVEDIYTFYKEAENESRPHDYMDSQPEINSTMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLATKIVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTHEQILVMEKKILGKLEWTLTVPTPYVFLARFIKASKDSNHEMENLVYFLAELGIMHYNTAMMYCPSMIAASAVYAARCTLKKTPAWDDTLKLHTGFSEPQIIDCAKLLVGFHGVAEKNKLQVIYRKYSSSERGAVALLQPAKALLAPNGGGVH 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19809750 19813091 + ClCG04G005770.1 Cla04g00589 270817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00589 457 CDD CYCLIN 324 413 IPR013763 -
Cla04g00589 457 ProSitePatterns Cyclins signature. 228 259 IPR006671 -
Cla04g00589 457 CDD CYCLIN 227 316 IPR013763 -
Cla04g00589 457 SUPERFAMILY Cyclin-like 327 447 IPR036915 -
Cla04g00589 457 Gene3D - 199 440 - -
Cla04g00589 457 PANTHER CYCLINS 21 451 IPR039361 -
Cla04g00589 457 PIRSF Cyclin_A_B_D_E 1 454 IPR039361 -
Cla04g00589 457 SMART cyclin_7 233 317 IPR013763 -
Cla04g00589 457 SMART cyclin_7 330 414 IPR013763 -
Cla04g00589 457 SUPERFAMILY Cyclin-like 188 323 IPR036915 -
Cla04g00589 457 SMART Cyclin_C_2 326 445 IPR004367 -
Cla04g00589 457 Gene3D - 213 324 - -
Cla04g00589 457 Pfam Cyclin, N-terminal domain 199 323 IPR006671 -
Cla04g00589 457 Pfam Cyclin, C-terminal domain 326 444 IPR004367 -
Cla04g00589 457 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 21 451 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02191 Cla-Chr2:37061403 Cla04g00589 Cla-Chr4:19809750 8.33E-118 dispersed
Cla04g00589 Cla-Chr4:19809750 Cla11g01821 Cla-Chr11:31856446 9.32E-82 dispersed
Cla04g00589 Cla-Chr4:19809750 Cla01g02033 Cla-Chr1:34872095 2.38E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00589 K21777 - csv:101217210 751.895