Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00590 ATGAGGGAAGAACACTCGAATTGGTTCTCTAGGTGGGAAGAGGAGCTTCCATCTCCAGATGAATTGATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTGGCCTTTGATATTCAGAATCCCAGCAATAGCAGTCCGCCGTTGCCTTGTCCATCTCCGCCGCTTTCGAATCCTCTGCCTGGCTCTGGCAACGGAATTGCGCAGCCCAACTCGGCGGATTTCGGCGATTCTGCCGATTTGGGCTCCGGCGCCGCCAGCGACGAGCCGGCTCGGACCCTCAAGCGACCACGCCTTGTTTGGACGCCTCAGCTCCACAAGCGATTCGTCGATGCTGTTGCTCATTTAGGGATAAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCCGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGGATGCAGGGGTTGTCCTCCGGCGGCGGCGGTGGTGGTGGTGGCTTGGTTGCTTCCTCCGATCCCGCCACTGACCATTTGTTTGCCAGCTCCCCAGTTCCACCCCATTTGCTTCACTCTGCTCGCACCAGTTCAGACCATTTCTTGCCCTTTGTTCCCATGGCCACTCTGCAGCAGCACCACCATCACCAGCAGCAGATGGCCGCTGCTGCTGCTGTCGCCGTCCATCCGCAGCTCCAGCCGCCTTATCATCGGCAGGTCGGGCATTTCGGGTCACCGCCGAATGGCCAGTTTGAGCATCCATTTTTAGCTAGACAGTCCCAGCCTATCCATAGAATGGGAGCACCAGTGCCTAATTCAGTTCCTAATTACATAGAGGATTTGGAATCAGCCAATGCCAGTGGAGGAAGAAAAGTTCTCACCTTATTTCCTACTGGGGATGATTGA 906 54.97 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNSSPPLPCPSPPLSNPLPGSGNGIAQPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGGGGLVASSDPATDHLFASSPVPPHLLHSARTSSDHFLPFVPMATLQQHHHHQQQMAAAAAVAVHPQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPVPNSVPNYIEDLESANASGGRKVLTLFPTGDD 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19825042 19825947 + ClCG04G005780.1 Cla04g00590 270818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00590 301 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677
Cla04g00590 301 Gene3D - 94 156 - -
Cla04g00590 301 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 301 - -
Cla04g00590 301 MobiDBLite consensus disorder prediction 1 91 - -
Cla04g00590 301 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
Cla04g00590 301 Pfam Myb-like DNA-binding domain 101 149 IPR001005 -
Cla04g00590 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Cla04g00590 301 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 301 IPR044841 GO:0003700|GO:0006355
Cla04g00590 301 MobiDBLite consensus disorder prediction 1 18 - -
Cla04g00590 301 MobiDBLite consensus disorder prediction 46 60 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00590 - - - csv:101216969 507.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01948 Cla-Chr2:34576637 Cla04g00590 Cla-Chr4:19825042 1.69E-32 dispersed
Cla03g00126 Cla-Chr3:1269309 Cla04g00590 Cla-Chr4:19825042 3.71E-13 dispersed
Cla04g00590 Cla-Chr4:19825042 Cla05g00679 Cla-Chr5:6321293 3.44E-24 dispersed
Cla10g01569 Cla-Chr10:31101821 Cla04g00590 Cla-Chr4:19825042 6.41E-126 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g02227 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.4e-42 168.3
Cla02g01833 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.6e-40 162.2
Cla07g00216 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 1.0e-39 161.0
Cla05g01126 . 246 446 G2-like Transcription Factor Family AT5G16560 56.5 8.3e-45 178.3
Cla09g01095 . 200 404 G2-like Transcription Factor Family AT5G16560 51.7 7.3e-41 165.2
Cla05g01991 CCT 1 167 G2-like Transcription Factor Family AT5G42630 58.3 7.6e-40 161.0
Cla08g01528 CCT 50 136 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Cla05g02327 . 19 256 G2-like Transcription Factor Family AT1G25550 55.4 5.7e-53 204.9
Cla08g00529 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.3e-52 201.4
Cla03g00126 CCT 183 451 G2-like Transcription Factor Family AT3G46640 51.7 3.3e-60 229.2
Cla04g00590 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.3e-74 275.0
Cla10g01569 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 7.2e-69 257.7
Cla09g02227 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.4e-42 168.3
Cla02g01833 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.6e-40 162.2
Cla07g00216 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 1.0e-39 161.0
Cla11g00689 . 2 228 G2-like Transcription Factor Family AT1G69580 56.0 9.4e-50 194.5
Cla09g02227 . 1 389 G2-like Transcription Factor Family AT1G79430 53.4 1.8e-83 306.6
Cla02g01833 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.6e-74 274.6
Cla04g00590 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.3e-91 333.6
Cla10g01569 . 1 283 G2-like Transcription Factor Family AT3G10760 57.8 5.4e-82 301.6
Cla04g00590 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.5e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60898 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g00590 Cla_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0