Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00594 ATGGACGGAAAGGGAAATGGAATTGCCAATTTTGTTGAGGGAGCACAGCCTTACATTGCTATGATCTCTCTCCAATTTGGCTATGCTGGCATGAACATCATCACCAAGGTAGCTCTCAACCGTGGAATGAGCCATTACGTTCTCGTCACCTATCGACAAGCTTTTGCCACGGTTGCCCTCGCTCCTTTCGCCTTCTTCCTTGAAAGGAAAGTGAGACCCAAAGTTAGTTTCCCTATGTTGATGCAGATTTTCCTTCTGGGTTTGTTAGGGCCAGTGATTGATCAAAACTTTTATTATGCTGGACTGAAGCTCACTTCTCCTACCTTTGCATGTGCCATGAGCAATATGCTTCCTGCAATGACATTCATCTTGGCTCTTCTTTGTAGGATGGAGAAATTGGAGATGAAGAAAGTGAGATGCCAAGCAAAGGTGGTGGGAACATTGGTGACAGTGGGTGGAGCCATTTTGATGACTTTATACAAAGGGAATGTCATAAGCTTCTTTTGGTCTCACCATAATTATCTTCACTCAACTACTTCTTCCAATTACTACTCTTTTGAAAGCACTTATCAAGATTGGGTAAAGGGTTCCATTCTTCTCCTTTTTGCCAATCTTGCTTGGGCTTTGTTCTTCATCCTTCAGGCAATGACATTGAGGAATTACACAGCCCATCTTTCTCTTACAACCCTTGTGTGCTTCTTTGGGACTTTGCAATCCATGGCTGTCACATTTGTAATGGAAAACAAAGCTTCTGTATGGAACATTGGATGGGACATGAATCTTCTTGCTTCTGTTTATGCTGGAATAGTTTCATCAAGCATAGCTTATTATGTCCAAGGGATGATTATGCAAAAGAGAGGGCCTGTTTTTGTCACAGCCTTTACCCCTATGATCATGATCATTGTTGCCATAATGGGCTCCTTCATGCTTGCTGAGAAGATGTATATCGGACGTGTTGTTGGAGGTGTTGTAATGGTGGTGGGGCTGTACTCGGTGCTATGGGGGAAATACAAAGATTACAAAGAAAAGGAAGCAATAATAGAAGAAAGCACCATGGTTGAACCAGTGAAGCTTTTAATAAGTGGAGGCAAATTAGTTGAGAATAAGAAGAAAAAATTAGCAACAGTGGTTGAAGAAGAAGAAGAAGAAACGACATCAACATCATCAAACGACATTGAAATGCAAAGGAACAACACAACATCAAATGTCGACAATAATAATGTTTCAAAATTGCCTTGTCCTCCTCCACTACCCATTATTGTTGTTGTAGCTATGGATGAAGCACCACCAAAAGTTTGA 1299 41.34 MDGKGNGIANFVEGAQPYIAMISLQFGYAGMNIITKVALNRGMSHYVLVTYRQAFATVALAPFAFFLERKVRPKVSFPMLMQIFLLGLLGPVIDQNFYYAGLKLTSPTFACAMSNMLPAMTFILALLCRMEKLEMKKVRCQAKVVGTLVTVGGAILMTLYKGNVISFFWSHHNYLHSTTSSNYYSFESTYQDWVKGSILLLFANLAWALFFILQAMTLRNYTAHLSLTTLVCFFGTLQSMAVTFVMENKASVWNIGWDMNLLASVYAGIVSSSIAYYVQGMIMQKRGPVFVTAFTPMIMIIVAIMGSFMLAEKMYIGRVVGGVVMVVGLYSVLWGKYKDYKEKEAIIEESTMVEPVKLLISGGKLVENKKKKLATVVEEEEEETTSTSSNDIEMQRNNTTSNVDNNNVSKLPCPPPLPIIVVVAMDEAPPKV 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19981693 19985916 + ClCG04G005820.1 Cla04g00594 270822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00594 432 MobiDBLite consensus disorder prediction 380 409 - -
Cla04g00594 432 MobiDBLite consensus disorder prediction 388 409 - -
Cla04g00594 432 PANTHER WAT1-RELATED PROTEIN 11 366 - -
Cla04g00594 432 PANTHER WAT1-RELATED PROTEIN 11 366 IPR030184 GO:0016021|GO:0022857
Cla04g00594 432 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 161 - -
Cla04g00594 432 Pfam EamA-like transporter family 18 157 IPR000620 GO:0016020|GO:0016021
Cla04g00594 432 Pfam EamA-like transporter family 195 333 IPR000620 GO:0016020|GO:0016021
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00594 Cla10g01563 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00594 Cla-Chr4:19981693 Cla11g01284 Cla-Chr11:26371717 1.96E-162 dispersed
Cla06g01001 Cla-Chr6:20869671 Cla04g00594 Cla-Chr4:19981693 1.36E-75 dispersed
Cla08g00712 Cla-Chr8:19390302 Cla04g00594 Cla-Chr4:19981693 4.53E-76 dispersed
Cla02g01456 Cla-Chr2:29106269 Cla04g00594 Cla-Chr4:19981693 4.76E-84 transposed
Cla06g00654 Cla-Chr6:8102760 Cla04g00594 Cla-Chr4:19981693 7.37E-81 transposed
Cla10g01563 Cla-Chr10:31033344 Cla04g00594 Cla-Chr4:19981693 1.44E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00594 - - csv:101216496 725.702