Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00617 ATGGAGAAGTACGAGAAGCTCGAAAAGGTCGGCGAAGGAACTTACGGGAAGGTCTACAAGGCCAAAGACAAGGAGACTGGCCAACTCGTTGCTCTCAAGAAAACTCGCCTTGAAATGGACGAAGAAGGCGTACCGCCGACGGCACTTCGTGAGGTTTCTCTTCTTCAATTGCTTTCTCAGTCTCTCTATGTCGTTCGTCTCCTCTGCGTTGAGCATGTTCACCACCATAAAAGTGGTAAGCCTCTTCTCTACCTTGTATTCGAGTATCTCGACACTGATCTCAAGAAGTACATCGATTCGCATCGTAAGGGCCCCAATCCTAGGCCTCTTCCTTCCACTCTTGTTCAGAGTTTCCTGTTTCAGCTCTGTAAGGGCGTTGCGCATTGTCATAGTCATGGCGTTCTTCACCGTGATCTCAAGCCGCAGAATCTACTTCTGGATCAAGGTAAAGGTGTTTTGAAGATTGCTGATCTTGGTCTTGGACGTGCTTTTACTGTCCCTCTTAAGAGCTACACTCATGAAATTGTTACTCTCTGGTATCGTGCTCCTGAGGTTCTCCTTGGTTCCACTCATTACTCCACTGCTGTCGATATGTGGTCTGTTGGTTGCATCTTCGCTGAAATGGTGAGGAGGCAGGCTTTGTTCCCCGGAGATTCTGAGTTCCAGCAGTTGCTCCACATTTTTAGGCTGCTAGGTACTCCCACCGAGAAACAGTGGCCTGGAGTTAGTTCTTTGAGGGATTGGCATGTCTATCCTCAATGGGAACCTCAGAATCTGACACGTGCAGTTCCATCCTTGGAACCCGAGGGTGTTGACCTTCTCTCGAAAATGCTTCAATATAATCCAGCAGACAGAATCTCAGCGAAAGCAGCTCTAGACCATCCCTATTTTGACAGCCTCGACAAGTCTCAGTATTAA 918 48.04 MEKYEKLEKVGEGTYGKVYKAKDKETGQLVALKKTRLEMDEEGVPPTALREVSLLQLLSQSLYVVRLLCVEHVHHHKSGKPLLYLVFEYLDTDLKKYIDSHRKGPNPRPLPSTLVQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQGKGVLKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTAVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIFRLLGTPTEKQWPGVSSLRDWHVYPQWEPQNLTRAVPSLEPEGVDLLSKMLQYNPADRISAKAALDHPYFDSLDKSQY 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20398325 20401964 + ClCG04G006070.1 Cla04g00617 270845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00617 305 SUPERFAMILY Protein kinase-like (PK-like) 1 300 IPR011009 -
Cla04g00617 305 SMART serkin_6 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00617 305 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Cla04g00617 305 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Cla04g00617 305 PANTHER CYCLIN-DEPENDENT KINASE B1-2 1 305 - -
Cla04g00617 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Cla04g00617 305 Pfam Protein kinase domain 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00617 305 ProSiteProfiles Protein kinase domain profile. 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00617 305 PANTHER CELL DIVISION PROTEIN KINASE 1 305 - -
Cla04g00617 305 Gene3D Transferase(Phosphotransferase) domain 1 92 305 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00617 Cla-Chr4:20398325 Cla11g01852 Cla-Chr11:32061152 1.03E-156 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80486 PF00069 Pkinase 7.30E-67 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00617 K07760 - csv:101204557 605.905