Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00632 ATGCCGTCTATGTGGAGGGATTGTGTTTGCCTTTTTCTGCTGTTGTGTTGTCGCTCCATGCTTCTTGCTGGTGCTGCTACCACAGAGCCATCTGATGTTAAAGCATTGCTAGCAGTAAAGAGGAGTCTAATTGATCCTATGGACCAGCTTATCAGTTGGACTAAGGGAGATCCTTGCACAGATAATTGGATTGGAGTAGTATGCAGCTATTCTGATGGAGCTGTCAGGAACTTACGTGTCAAAGAACTCCAGCTATTGTACATGGACCTATCTGGAAAGTTAGCCCCTGAGATCAGCCAACTGTCCGTGCTTGAGAAGTTAAATTTCATGTGGAATAACCTAACTGGTTCAATTCCAAAGGAGATTGGCAGTATTTTGTCGCTGAAACTTTTACTCCTAAATGGAAATAAACTATCTGGTTCTCTTCCGGATGAGCTTGGTAATCTTACAAATCTCAACCGGTTCCAAGTAGATCAGAATCAAATTTCTGGGCCTATCCCAAAATCATATGCCAACTTGATCCGTGTGAAGCACCTCCACTTCAATAACAACACACTAAGTGGTGAAATTCCATCTGAGCTTTCCAAATTACCCAAGCTTATTCACTTGCTTTTGGATAACAATAACTTGTCGGGTTCGCTGCCACCAGAATTTTCGACCTTGCCAATGCTACACATTCTGCAACTTGATAATAACAACTTCGAAGGTGAAATTCCGGCATCTTATGAAAATTTTCCTAAATTAGTGAAATTAGGTAACAACCAAAAGAAATTGGCTTCACGAATATTCTCAATGGGTGCTAATGCTCTTCTCTACCACCGATATGGTTCTCCCAGAAGTCTGAGGAATTGTGGCTTGGAGGGACCGATTCCTAATTTTAGCAAGATAGCAAACCTCAGTTACTTAGATCTTAGCTGGAACCATTTTACTGGACCCATACCACCTTATAACCTCTCTTGTAGGATGACAACAATAATTTTGTCGAACAACCAGCTGAATGGATCTATACCCAGAAGTTTCTCCAATCTTCCTATCCTCCAGAAACTGTCACTTGAGAATAATTTTCTGAATGGTTCTGTACCTTCTGCTCTATGGGAGACAATGTCCTTCGAATCAAGTGCTCGACTTACACTCGATCTTCGGAACAATTCGTTCTTTGACATTTCTGGAAGCACAAACCCTCCTGCTAATGTCACCCTAAGGCTTGGAGGAAATCCAATCTGCCAAAATTTGAGCGGACAAAACTCTGACCAGTTCTGTACATTCAAAATGGTAGTGGATGGGCTTCATACAAGCTCAAGGAATTCCAGTAAAACATGTCCGGTTAGCAGTTGTCCAACGGACAGTTTCTTTGAATTAGTGCCAGACACTCCTGACCCATGCTTTTGTGCATCACCCCTTGGGATTGGATATAGGCTGAAGAGTCCAAGTTTTTCCTACTTTCCTCCATACATGCATTTATTTGAAGTGTATCTGACAAAGGAACTCGGTTTGAATAAGCACCAATTGTTAATCGATTCATACGATTGGGAAGGAGCTCGCCTGAGGATGTATCTGAAGCTTTTTCCATCATTTGATAGTGGCACTCATAAATTGGATATAACTGAGATATTTCTCATTACAGAACAATTTATGTCATGGAATTTTACCCCAAATGACGTGTTTGGCCCATACGAGCTTCTCAACTTCACACTCCCTGACCGTTTTCAGACTGTCATTTTCGAGACAGAGAAGATGGGCATTAGTACAGGCATCCTGGCAGCCATTATAGTTGGATCTGTTTTTTGTGTTCTTTTGATTGTAGCAGTAACCGTACTTCTAGTCACTAGGCATTCTAGATACCATCAGGTTTTGTCAAGGAAAAATCTCTCTTCAACGATTGGTCTGAAAATTGATGGTGTAAAAGCATTTTCATTCAAAGAAGTGCAATTGGCTACTGGAAATTTCAACCGCTCAACTCAAGTTGGCCGAGGTGGTTATGGCAGGGTCTATAAAGGCATACTATCAGATAATTCAGTTGTAGCCATCAAGCGTGCAGAAGAAGGATCTTTACAAGGCCAAAAAGAATTTTTGACGGAGATAAAACTCTTATCACGATTGCATCACCGAAACTTAGTATCCCTAATTGGATATTGTGATGAAGAAGGGGAACAAATGCTGGTTTACGAGTTTATGCCGAATGGAACTTTGCGGGACTGGCTTTCTGGTTTTGAGTTTTCTGACAAAAGTAACACTACAGTAAATCTGAATTTTCGTATGAGACTACAAATTGCACTGGGTTCAGCTAAAGGTATACTGTATCTCCACACTGAAGCAAATCCTCCTATATTTCACCGAGACATCAAAGCTAGAAACATACTCCTCGATGCCAAGTTCACGGCCAAAGTGGCTGATTTTGGATTGTCACGTCTTGCTCCTGATCTGGATTTCGAGGGGGATGTTCCTGGACATATATCTACTGTCGTGAAGGGTACCCCTGGTTATCTTGATCCAGAGTACTTCTTAACCCGTAAACTGACAGACAAAAGTGATGTCTATAGCTTAGGAGTTGTGTTCTTGGAGCTCTTGACGGGTATGCACCCTATTTCGCATGGCAAAAACATCGTTCGTGAGGTAAAATTGGCACATCAAATGGGAACAATTCTTTCAATTGTAGACACCAGTTTGGGTTCTTTCGCATCTGAGTGTTTAGAGAGGTTTGTCGCTTTGGCCCTCAGTTGTTGCCATGACCATCCAGAAGAGCGGCCGTCAATGCTGGTTGTGGTGAGGGAGCTGGAGAACATACTAAACATGATGCCCGACGATAGCGGCACCTTGTATTCAGACTTGTCCACAAGATCAAGTGCCAGGCTTCCATCCTCACCGACATCAACGTCCTGCATCACCCGGGACCAGTTTGCATCAGGAAGCATTTCGGGGAGCGATCTCATCAGTGATGTCATGCCAACCATCAGACCTCGATGA 2964 42.58 MPSMWRDCVCLFLLLCCRSMLLAGAATTEPSDVKALLAVKRSLIDPMDQLISWTKGDPCTDNWIGVVCSYSDGAVRNLRVKELQLLYMDLSGKLAPEISQLSVLEKLNFMWNNLTGSIPKEIGSILSLKLLLLNGNKLSGSLPDELGNLTNLNRFQVDQNQISGPIPKSYANLIRVKHLHFNNNTLSGEIPSELSKLPKLIHLLLDNNNLSGSLPPEFSTLPMLHILQLDNNNFEGEIPASYENFPKLVKLGNNQKKLASRIFSMGANALLYHRYGSPRSLRNCGLEGPIPNFSKIANLSYLDLSWNHFTGPIPPYNLSCRMTTIILSNNQLNGSIPRSFSNLPILQKLSLENNFLNGSVPSALWETMSFESSARLTLDLRNNSFFDISGSTNPPANVTLRLGGNPICQNLSGQNSDQFCTFKMVVDGLHTSSRNSSKTCPVSSCPTDSFFELVPDTPDPCFCASPLGIGYRLKSPSFSYFPPYMHLFEVYLTKELGLNKHQLLIDSYDWEGARLRMYLKLFPSFDSGTHKLDITEIFLITEQFMSWNFTPNDVFGPYELLNFTLPDRFQTVIFETEKMGISTGILAAIIVGSVFCVLLIVAVTVLLVTRHSRYHQVLSRKNLSSTIGLKIDGVKAFSFKEVQLATGNFNRSTQVGRGGYGRVYKGILSDNSVVAIKRAEEGSLQGQKEFLTEIKLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMPNGTLRDWLSGFEFSDKSNTTVNLNFRMRLQIALGSAKGILYLHTEANPPIFHRDIKARNILLDAKFTAKVADFGLSRLAPDLDFEGDVPGHISTVVKGTPGYLDPEYFLTRKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVKLAHQMGTILSIVDTSLGSFASECLERFVALALSCCHDHPEERPSMLVVVRELENILNMMPDDSGTLYSDLSTRSSARLPSSPTSTSCITRDQFASGSISGSDLISDVMPTIRPR 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20628995 20641094 - ClCG04G006220.1 Cla04g00632 270860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00632 987 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Cla04g00632 987 ProSitePatterns Protein kinases ATP-binding region signature. 655 677 IPR017441 GO:0005524
Cla04g00632 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 776 788 IPR008271 GO:0004672|GO:0006468
Cla04g00632 987 Gene3D Ribonuclease Inhibitor 277 436 IPR032675 -
Cla04g00632 987 Pfam Protein kinase domain 650 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00632 987 Gene3D Ribonuclease Inhibitor 29 274 IPR032675 -
Cla04g00632 987 SUPERFAMILY L domain-like 49 414 - -
Cla04g00632 987 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 280 957 - -
Cla04g00632 987 ProSiteProfiles Protein kinase domain profile. 649 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00632 987 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 6 265 - -
Cla04g00632 987 Gene3D Transferase(Phosphotransferase) domain 1 725 941 - -
Cla04g00632 987 CDD STKc_IRAK 655 928 - -
Cla04g00632 987 SMART serkin_6 649 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00632 987 SUPERFAMILY Protein kinase-like (PK-like) 634 956 IPR011009 -
Cla04g00632 987 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 6 265 - -
Cla04g00632 987 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 280 957 - -
Cla04g00632 987 Gene3D Phosphorylase Kinase; domain 1 620 724 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00632 Cla10g01521 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00002 Cla-Chr3:56181 Cla04g00632 Cla-Chr4:20628995 0 dispersed
Cla04g00632 Cla-Chr4:20628995 Cla10g01257 Cla-Chr10:27428139 4.27E-163 dispersed
Cla05g01702 Cla-Chr5:28767716 Cla04g00632 Cla-Chr4:20628995 9.21E-17 dispersed
Cla04g00632 Cla-Chr4:20628995 Cla04g00639 Cla-Chr4:20781889 1.04E-71 proximal
Cla07g00396 Cla-Chr7:4912813 Cla04g00632 Cla-Chr4:20628995 1.24E-65 transposed
Cla10g02161 Cla-Chr10:37221640 Cla04g00632 Cla-Chr4:20628995 3.27E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80487 PF00069 Pkinase 5.20E-46 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00632 - - bhj:120073192 1699.49