Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00636 ATGAGGCTACAATCCCTTTTTGCAGCATCATCTTTACTCTTACTCATATATTTTCTCTCCTTCATTGCGGCTGATCTAAACTCAGACCGGCAAGCTCTTCTGGAGTTTATTTCAACAGTTCCCCATGGTCGGAAAATTAACTGGGATCCATCTACCCCTGTCTGCACTACATGGGTTGGCGTCACTTGTACTTCAGACCTCTCTAATGTGCTTGCTCTCAGGCTGCCTGCTGTTGGACTGTATGGTCCGATCCCGGCCAATACACTTGGAAAGTTAGATGCCCTTAGAACTTTGAGTCTTCGATCTAATAATCTTAATGGAAATCTTCCATCAGATGTGCTATCCCTTCCCTCCCTAAAGTTTATATATCTTCAACACAATAACTTTTCTGGTAAAATACCTTCTTCCCTGTCGCCTAGCCTTACCTTCCTTGATCTGTCCTTCAACTCTCTCACTGGAAACATTCCGAAATCAATACAAAATTTAACGCACCTCACTGGCCTAAACGTCCAAAACAACTCCCTGACTGGATCCATTCCTGATATAGGTCACCTAAAGCTTAAGCAATTGAACTTGAGCTACAACCATCTCAGCGGTCCCATTCCTGCTTCACTGCAATCATTTCCTACTTCTTCCTTTGAAGGGAACTCACTGCTATGTGGCTCGCCACTTAAAAATTGCTCAGTTGGTGCCCCCTTACCTTCTCCATCTCCTGTTTCTTTGCCCCCACCAAAGAAAAAGAGCAAAAAGAAAATAAATATTGGAGCTATTGTTGCCATCGCCCTAGGTGGTGCTGCCGTGCTCTTCCTCCTCATGTTATTGATTGTTGTCTGCTGTATGAAGCGAAAAGATGGTGAAGGTAGTGCTGCTGCTGTGAAAGGAAAGGGTAAAAGGACTGAGCAACCGAAGGAGGATTTCGGAAGCGGGGTACAAGAGCCTGAGAAAAACAGGCTGGTTTTCTTTGAAGGCTGTTCTTATAATTTTGATCTTGAGGACTTGTTAAGGGCGTCTGCTGAAGTGCTCGGAAAAGGGAGTTATGGAACTACTTACAAGGCAATCTTGGAGGAAGGAGTAACAGTGGTAGTAAAGAGGTTGAAGGAAGTGGTGGCTGGGAAAAAGGAATTTGATCAACAAATGGAGATTGTTGGGAGGATGGGCCAGCATCCAAACGTCGTGCCTCTCCGTGCCTATTACTATTCAAAAGATGAGAAGCTTTTGGTTTACGACTATGCCGTTGCTGGAAGCTTTTCAGCATTACTCCGTGGAAGCCGAGAAGGTGGACGAGCGCCACCGGACTGGGAAACAAGATTGAAGGTTTCCTTGGGGTGTGCCAAAGGGCTTGCACATATCCATTCAGCAAGTGGGGGGAAATTCATCCATGGCAACATAAAGTCCTCTAACATCCTTCTCACACAAGACCTGAATGGTTGCATTTCAGATTTTGGCCTGACTCCTCTGATGAACTCCCCTGCCATTCCCTCTAGAAGTGTAGGTTATCGTGCTCCAGAGGTGATCGAGACTCGAAAATCAACTCAAAAGTCAGATGTTTACAGTTTTGGAGTTGTTTTGCTAGAGATGTTGACTGGGAAAGCACCATCCCAATCGCCCGGCCGCGACGATGTTATGGACCTTCCGAGATGGGTCCAGTCTGTGGTAAGAGAGGAATGGACATCTGAGGTGTTTGATGTAGAGTTAATGAAGTATCAGAACATTGAAGAAGAGCTTGTTCAAATGCTCCAAATAGCAATGGCTTGCGTGTCTCGAGTGCCAGATATGAGACCAACGATGGAAGAAGTAGTTAGGATGATCGAGGAAATCCGACAATTAGACTCAGGAACTCGACCATCATCAGAAGATAACAAAGCTGGGGACGGGGACGATGACTTGAATACTCAGACCTTCTCTTTCCTGCCGATCCTGATCTTCATCCCCTCGTCGATCGCAAACCCTTTTGATTTCTCAAGGTTTTTCTCTCATTTTCCGCCTTTTCTTGCGTTCTGTGTTGATCATGGCTTCGAAGCGTATCTTGAAGGAACTCAAGGATTTACAGAAGGATCCACCCACATCTTGCAGTGCTGGACCAAAGTGTTTCACCCAAATATCAATAGCAATGGAAGCATTTGTCTTGACATCCTTAAAGAACAGTGGAGCCCTGCGCTTACGATTTCCAAGCTAGTTTTGTCATGTTTGAGATCTATATGCTTCTGCCATAGTAAAGTTCTGTGTAGCATGGATGCTTACTTGATCGAAGTACCCTATTTGATGGAGAATCTTACAACACTCGATCTGATTATTTCTTTGAGCCATGGTTTCCCTATGCAATTAGGAGTTCTATTTTCTGTGAAGAATTTGGGTCTCGGGCCCAACTCCTTGCATTATACTTATGGCCCACACCCTACTAATCCCAGGATGGGAAGCCATTCCACGGGGAACTTGCATGCTCATCAACTTTTTGTTGATTTATGTTCTAGAAATGTTAAGGTACTGCTTTCCATATGCTCATTGCTGACTGATCCAAACCCAGACGACCCTCTTGTACCAGAGATCGCGCACATGTACAAGACCGACCGAACCAAATATGAAGCGAGTGCACGGAGCTGGACTCAGAAGTATGCGATGGGTTGA 2625 45.14 MRLQSLFAASSLLLLIYFLSFIAADLNSDRQALLEFISTVPHGRKINWDPSTPVCTTWVGVTCTSDLSNVLALRLPAVGLYGPIPANTLGKLDALRTLSLRSNNLNGNLPSDVLSLPSLKFIYLQHNNFSGKIPSSLSPSLTFLDLSFNSLTGNIPKSIQNLTHLTGLNVQNNSLTGSIPDIGHLKLKQLNLSYNHLSGPIPASLQSFPTSSFEGNSLLCGSPLKNCSVGAPLPSPSPVSLPPPKKKSKKKINIGAIVAIALGGAAVLFLLMLLIVVCCMKRKDGEGSAAAVKGKGKRTEQPKEDFGSGVQEPEKNRLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTTYKAILEEGVTVVVKRLKEVVAGKKEFDQQMEIVGRMGQHPNVVPLRAYYYSKDEKLLVYDYAVAGSFSALLRGSREGGRAPPDWETRLKVSLGCAKGLAHIHSASGGKFIHGNIKSSNILLTQDLNGCISDFGLTPLMNSPAIPSRSVGYRAPEVIETRKSTQKSDVYSFGVVLLEMLTGKAPSQSPGRDDVMDLPRWVQSVVREEWTSEVFDVELMKYQNIEEELVQMLQIAMACVSRVPDMRPTMEEVVRMIEEIRQLDSGTRPSSEDNKAGDGDDDLNTQTFSFLPILIFIPSSIANPFDFSRFFSHFPPFLAFCVDHGFEAYLEGTQGFTEGSTHILQCWTKVFHPNINSNGSICLDILKEQWSPALTISKLVLSCLRSICFCHSKVLCSMDAYLIEVPYLMENLTTLDLIISLSHGFPMQLGVLFSVKNLGLGPNSLHYTYGPHPTNPRMGSHSTGNLHAHQLFVDLCSRNVKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRTKYEASARSWTQKYAMG 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20744678 20756557 + ClCG04G006260.2 Cla04g00636 270864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00636 874 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Cla04g00636 874 SUPERFAMILY UBC-like 826 873 IPR016135 -
Cla04g00636 874 MobiDBLite consensus disorder prediction 289 310 - -
Cla04g00636 874 SMART ubc_7 600 873 - -
Cla04g00636 874 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 597 770 IPR000608 -
Cla04g00636 874 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515
Cla04g00636 874 Pfam Leucine Rich Repeat 186 208 IPR001611 GO:0005515
Cla04g00636 874 Gene3D Ribonuclease Inhibitor 187 227 IPR032675 -
Cla04g00636 874 Pfam Protein kinase domain 338 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00636 874 ProSiteProfiles Protein kinase domain profile. 335 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00636 874 PANTHER OS05G0588300 PROTEIN 9 621 - -
Cla04g00636 874 SUPERFAMILY UBC-like 691 730 IPR016135 -
Cla04g00636 874 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 697 712 IPR023313 -
Cla04g00636 874 Gene3D Transferase(Phosphotransferase) domain 1 413 627 - -
Cla04g00636 874 Gene3D Ubiquitin Conjugating Enzyme 822 874 IPR016135 -
Cla04g00636 874 Gene3D Ubiquitin Conjugating Enzyme 652 748 IPR016135 -
Cla04g00636 874 Pfam Ubiquitin-conjugating enzyme 691 729 IPR000608 -
Cla04g00636 874 Pfam Ubiquitin-conjugating enzyme 827 867 IPR000608 -
Cla04g00636 874 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
Cla04g00636 874 Gene3D Phosphorylase Kinase; domain 1 303 410 - -
Cla04g00636 874 PANTHER OS05G0480400 PROTEIN 9 621 - -
Cla04g00636 874 ProSitePatterns Protein kinases ATP-binding region signature. 341 372 IPR017441 GO:0005524
Cla04g00636 874 SUPERFAMILY Protein kinase-like (PK-like) 339 604 IPR011009 -
Cla04g00636 874 CDD STKc_IRAK 341 606 - -
Cla04g00636 874 SUPERFAMILY L domain-like 39 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01856 Cla-Chr2:33705634 Cla04g00636 Cla-Chr4:20744678 2.32E-13 dispersed
Cla04g00636 Cla-Chr4:20744678 Cla11g00245 Cla-Chr11:2868483 0 dispersed
Cla07g00678 Cla-Chr7:14544514 Cla04g00636 Cla-Chr4:20744678 4.49E-111 dispersed
Cla11g01352 Cla-Chr11:26999967 Cla04g00636 Cla-Chr4:20744678 8.76E-91 dispersed
Cla04g00636 Cla-Chr4:20744678 Cla01g00205 Cla-Chr1:2033852 4.73E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80488 PF00069 Pkinase 1.40E-37 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00636 - - csv:101210437 1113.6