Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00644 ATGATAAGAGAAGACGGTGCCGTATTCAGCGAACCAGACAGCCATCGGATCGATCCATGGAAACCAAACCACAGCATCATATTCAATCAAACACAAACCCATTTCCAGTTGCATAGCTTCCTTTTCGAATTGGTGTGCATTGAAGGGGCCTCTGATCTCTCTGCTTCTCTACTTTCTTTCATCAATTCCGAGACGATAACCCTTCTCTTTCATACCCTTCTTACAGGTAGTGTTATTATTTTGGATCCACGAGAGGGCGTTGTCAATACTTCGTCGAATCGAGCTATTTCTGTGGGCCTCTGTTGGAAACTTGAAAGGCCGGTCTCTGATCTGATTTTTTCTTGCGTTGTCCGAGGGAAAGGCAGGTGTTTGAATGTGTCGCCATTGCTAAGCCCCTCCATTATATTTCACTATCTTCTTCACTCCCAGGCAGAGGGATTTTTTCCCTTGCTGGCTTCATCAGATTCTCCATCAGTTATTGAATACAGATCCCCATCTCGAAATCGTGGTTCCGTTGGTTGTCTATGTCGCAGTGCTTCCTTCACCTCTTCCAGTTACGACGATGCTCAGAGTGACATTGTGGATGTGAAGGAAAACTGCACCAGCCCTTTTGGAGATAACGGTTGGAGTAGTGAGAATTGCCTCAGACGGTCCACTTCGCTTTCTAGAAAGAGGCAGTTTTATACTGTTGGCTCTCTGTTTCCTCAGCAGTTTCCTTTTGGCTACCCCACCCAGGATAGAAGACGCCTGGTCTCGTGGGGTGCAATGGAGTTGCATAATGATGACCCTGCAAGCTTTGAACTTACTAGGGTCCAGGAGAAGTTGCATAAGGCGCAAAGAAGTCGTCATAAGAGCATACAGTTTGATGATAATTTACAACATGACGATAATCCAAGGTTGATATACATCAATGATCCAAGGAGAACTAATGACAAGTATGAGTTCACAGGAAATGAGATAACCACCAGCAAGTACACATTGATTACCTTCTTGCCAAAGAACCTCTTTATTCAGTTCCACCGTGTAGCATATCTTTATTTTCTTGCCATTGCAGCTCTTAACCAGCTTCCACCTTTGGCAGTCTTTGGGAGAACAGTATCTCTTTTTCCCCTTCTGTTTGTGCTCTGTGTTACAGCTATTAAAGATGGCTACGAAGATTGGCGTAGACACAGATCTGATCGCAATGAGAACAATAGACAGGCTCTGGTGTTTCAATCTGATGATTTCCGATTGAAAGTATGGAAAAAAATACGAGCAGGTGAAGTTGTAAAGATTTGTGCTGATGAGGTCATTCCTTGTGACATGGTTTTATTGGGGACAAGTGATCCCAGTGGCCTTGCTTACATCCAAACGATGAATTTGGATGGTGAGTCAAACTTGAAGACAAGGTATGCTAGGCAGGAAACAGCATCTGCAGTAGCCGAGGGATGTTCATATTCTGGTCTTATTCGATGTGAACAACCTAATAGGAACATTTATGAGTTCACTGCCAATATGGAGTTCAACGGTCATAAATTTCCCCTCAGCCAGTCAAACATAGTCTTGCGTGGTTGTCAGCTAAAGAACACTGAATGGATTATTGGGGTGGTTGTCTATGCTGGACAAGAGACAAAAGCCATGCTAAACAGTGCAATGTCTCCTGCCAAGCGAAGTAAACTGGAGGGTTACATGAACAGGGAAACATTGTGGTTGTCAATTTTCCTCTTTATCATGTGTCTAGTTGTGGCCCTTGGAATGGGCTCATGGCTCGTTCGGCACAAGGAACGGCTTGATACCTTGCCATATTATAGGAAAAGGTATTTCACTAATGGGGCAGATGATGGTAAGAGGTACAGGTTTTATGGAATTCCTATGGAGACATTTTTCTCCTTTCTGAGTTCTATTATAGTGTTTCAGATCATGATACCGATATCCCTTTATATTACGATGGAGATGGTGAGACTAGGCCAGTCATATTTCATGATTGAAGATAAGCACATGTACTGCAGAATCTCTTCCTCAAGGTTCCAGTGCAGATCGTTGAATATCAATGAGGATCTTGGTCAAGTTCGCTATGTATTTTCTGATAAAACAGGAACACTTACTGAAAATAAAATGGAATTTAAAAGAGCAAGCGTGCACGGGAAGAATTACGGGAACAACTTGTCTGAGGAATATTCATCGATGTTGTATTCCATCCCAGCAACTTTAGGGAGGAGGAGGTGGAAACTTAAATCTGAAGTTGCTGTTGATACCGAACTTGTCAAATTATTGCACAAGGGCCTAAACGGAGATGAAAAGATTGCTGCACATGAATTTTTTCTTACATTGGCTGCATGCAATACTGTAATTCCTATTCACATGGATGACAAATCTAATTATGCAAATGGCGAATTGCACGAGGATTTTGAAACTATTGATTATCAGGGGGAATCCCCTGACGAGCAAGCACTAGTTGCTGCAGCCTCCGCTTATGGATATACCCTTTTTGAGCGCACGTCGGGGCATATCGTTATTGATGTCAATGGTGAGAACTTAAGGTTAGACGTTTTGGGTTTACATGAGTTCGATAGTGTTCGCAAAAGAATGTCTGTCGTCATCAGATTCCCCGACAACACTATAAAGGTTCTGGTAAAAGGTGCCGATACTTCAATGTTGAGTATTTTAGGCATTGACTATGATAGGGAAGAATTTATCAAGCATACTACTCAGAGCCATTTGGGTGAATATTCAATGGAAGGTTTGCGAACACTTGTAGTTGCTGCCAGAGATCTGAAAGATTCTGAATTTGAGTTGTGGCAGACCAGATATGAGGATGCTAGTACTTCACTGACTGAAAGAGCAGTAAAACTACGTCAGACAGCAGCCCTTATAGAATGTGATCTAAAGCTTTTGGGTGCAACCGCGATTGAGGACAAACTTCAAGATGGTGTACCTGAAGCCATTGAATCTCTTCGGCAGGCAGGAATAAAGGTTTGGATTCTGACTGGAGATAAGCAGGAGACAGCCATATCAATCGGTCTCTCCTGCAAACTGCTGACTTCTGATATGCAGTCAATAATTATCAATGGAAATTCCGAGAATGATTGCAGGCAACTTTTAGCTGATGCTATGGAAAAATATAGTATTAAATCAACACAGTGCGGAAGTCAAAGACCGAATCATAAGAACTGTGAGAATGAATGTCATGATTTACCAAAGACATCTAGTATGTCAGATTTTAACGAAGGGAAAGAAGACCTGACTGATAAACCACTAGCTCTAATAATTGACGGAAACAGTTTGCTTTTTGACCTTGCAACTTCATGCGATGTTGTGCTATGTTGTCGTGTCGCTCCTCTGCAGAAAGCTGGAATTGTTGATTTGATCAAGAGTAGAACTGATGATATGACATTGGCAATTGGTGATGGGGCCAATGATGTCTCAATGATTCAGATGGCCGATGTAGGTGTTGGTATATGTGGACAGGAGGGGCGTCAAGCAGTAATGGCATCTGATTTTGCCATGGGACAATTTCGCTTTCTAAAAAGATTGCTTCTAGTGCATGGACATTGGAACTATCAACGTGTAGGCTACATGGTTCTTTACAACTTCTACCGCAATGCTGTTTTCGTCTTGATGCTCTTCTGGTACATTCTATGCACGGCATTCTCAACAACTTCAGCTTTGACCGATTGGAGTAGTGTGTTTTACTCTGTTATTTATACTTCTATCCCTACTATTTTTGTTGACTTGAGTGACAAAACTCTACTCCAATATCCTAAGCTGTATGGTGCTGGCCATAGACAGGAGGCATACAATTTGCGTCTCTTTTGGTTCACAATGATTGATACCCTGTGGCAGAGTCTTGTTCTCTTCTATGTCCCATTATACATTTACAAGGAGAGTACCATTGATATATGGAGCTTGGGAAGTTTGTGGACGATAGCGGTTGTTATCCTTGTGAACGTACACTTGGCGATGGATGTTCAACGTTGGGTATATATTACACATGCTGCCGTCTGGGGATCCATAGTCATAACATATGCCTGCATGGTGGTGTTGGATTCGATACCGGACGATCTTTCATCTTGCCAAGTCCCCAACTTACTGGCTAACTATATTGCTCATAATAGTTGTAGCATTGCTTCCACATTTTGGCCCTCGGATATTCAGATAGCCAGAGAAGCTGAGGTGCTGAGAAAACGAAAAGGTCGTGAACAAATGGGCTCAAAGCGAGATCGAGATTCCAATTAA 4215 42.44 MIREDGAVFSEPDSHRIDPWKPNHSIIFNQTQTHFQLHSFLFELVCIEGASDLSASLLSFINSETITLLFHTLLTGSVIILDPREGVVNTSSNRAISVGLCWKLERPVSDLIFSCVVRGKGRCLNVSPLLSPSIIFHYLLHSQAEGFFPLLASSDSPSVIEYRSPSRNRGSVGCLCRSASFTSSSYDDAQSDIVDVKENCTSPFGDNGWSSENCLRRSTSLSRKRQFYTVGSLFPQQFPFGYPTQDRRRLVSWGAMELHNDDPASFELTRVQEKLHKAQRSRHKSIQFDDNLQHDDNPRLIYINDPRRTNDKYEFTGNEITTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRQALVFQSDDFRLKVWKKIRAGEVVKICADEVIPCDMVLLGTSDPSGLAYIQTMNLDGESNLKTRYARQETASAVAEGCSYSGLIRCEQPNRNIYEFTANMEFNGHKFPLSQSNIVLRGCQLKNTEWIIGVVVYAGQETKAMLNSAMSPAKRSKLEGYMNRETLWLSIFLFIMCLVVALGMGSWLVRHKERLDTLPYYRKRYFTNGADDGKRYRFYGIPMETFFSFLSSIIVFQIMIPISLYITMEMVRLGQSYFMIEDKHMYCRISSSRFQCRSLNINEDLGQVRYVFSDKTGTLTENKMEFKRASVHGKNYGNNLSEEYSSMLYSIPATLGRRRWKLKSEVAVDTELVKLLHKGLNGDEKIAAHEFFLTLAACNTVIPIHMDDKSNYANGELHEDFETIDYQGESPDEQALVAAASAYGYTLFERTSGHIVIDVNGENLRLDVLGLHEFDSVRKRMSVVIRFPDNTIKVLVKGADTSMLSILGIDYDREEFIKHTTQSHLGEYSMEGLRTLVVAARDLKDSEFELWQTRYEDASTSLTERAVKLRQTAALIECDLKLLGATAIEDKLQDGVPEAIESLRQAGIKVWILTGDKQETAISIGLSCKLLTSDMQSIIINGNSENDCRQLLADAMEKYSIKSTQCGSQRPNHKNCENECHDLPKTSSMSDFNEGKEDLTDKPLALIIDGNSLLFDLATSCDVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRFLKRLLLVHGHWNYQRVGYMVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSIPTIFVDLSDKTLLQYPKLYGAGHRQEAYNLRLFWFTMIDTLWQSLVLFYVPLYIYKESTIDIWSLGSLWTIAVVILVNVHLAMDVQRWVYITHAAVWGSIVITYACMVVLDSIPDDLSSCQVPNLLANYIAHNSCSIASTFWPSDIQIAREAEVLRKRKGREQMGSKRDRDSN 1404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20843465 20850492 + ClCG04G006340.2 Cla04g00644 270872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00644 1404 Pfam Phospholipid-translocating P-type ATPase C-terminal 1155 1347 IPR032630 -
Cla04g00644 1404 Gene3D - 955 1167 IPR023214 -
Cla04g00644 1404 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 1098 1213 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla04g00644 1404 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 620 711 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla04g00644 1404 SFLD C1.7: P-type atpase like 671 1178 - -
Cla04g00644 1404 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 296 1402 - -
Cla04g00644 1404 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 693 971 IPR023299 GO:0000166
Cla04g00644 1404 SUPERFAMILY Calcium ATPase, transmembrane domain M 315 1342 IPR023298 -
Cla04g00644 1404 ProSitePatterns E1-E2 ATPases phosphorylation site. 689 695 IPR018303 -
Cla04g00644 1404 CDD P-type_ATPase_APLT_Dnf-like 317 1282 - -
Cla04g00644 1404 Gene3D - 663 683 - -
Cla04g00644 1404 Pfam Phospholipid-translocating ATPase N-terminal 301 366 IPR032631 -
Cla04g00644 1404 SUPERFAMILY HAD-like 682 1173 IPR036412 -
Cla04g00644 1404 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 315 1346 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cla04g00644 1404 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 296 1402 - -
Cla04g00644 1404 SUPERFAMILY Calcium ATPase, transduction domain A 398 540 IPR008250 -
Cla04g00644 1404 Pfam E1-E2 ATPase 399 645 - -
Cla04g00644 1404 Gene3D - 377 544 - -
Cla04g00644 1404 Gene3D - 801 938 IPR023299 GO:0000166
Cla04g00644 1404 SFLD p-type atpase 671 1178 IPR044492 -
Cla04g00644 1404 Pfam haloacid dehalogenase-like hydrolase 684 999 - -
Cla04g00644 1404 Gene3D - 697 719 IPR023299 GO:0000166
Cla04g00644 1404 Gene3D - 684 696 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00644 Cla-Chr4:20843465 Cla04g01120 Cla-Chr4:26405711 0 dispersed
Cla08g00858 Cla-Chr8:20979650 Cla04g00644 Cla-Chr4:20843465 0 transposed
Cla10g01496 Cla-Chr10:30188099 Cla04g00644 Cla-Chr4:20843465 3.61E-16 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00644 K14802 - csv:101206692 2316.96