Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00650 ATGGCACAATCAATTGGATATGCTGAAACAGATCCATCTGGTCGCTATGGACGGTTTAGAGAAATTCTAGGCAAAGGAGCCATGAAAACAGTATATAAAGGGTTTGATGAGATGCTTGGAATTGAAGTAGCTTGGAATCAAATCCACCTCAAAGATGTCTTCCATTCCCCTCAAGAACTACAACGTCTATACTCAGAAATTCATCTCCTCAAGAACCTTGACCACGACTCGATCATCCGGTTCTACACTTCTTGGATCGATACTCATTGCCGAACCTTCAATTTCATCACCGAAATGTTCACCTCCGGCACCCTTAGAGAGTACCGACAAAAGTATCGAAACGTCAATATCGAAGCAATCAAGAATTGGGCTCGTCAAATCCTACAAGGTCTGGCTTATCTTCATGGTCATGATCCACCTGTAATCCATAGAGACCTCAAGTGTGATAACGTATTTATCAACGGCCATCTCGGACTAGTTAAAATCGGTGATCTAGGACTTGCGACAATCCTTCATGATTCTAAATATGCCTATAGCGTCATAGGTACACCAGAATTCATGGCACCAGAGCTTTATGATGAGGAATATAATGAACTTGTGGATGTTTATTCTTTTGGGATGTGTATGATTGAGATGCTTACTTTGGAGTATCCTTATAGCGAGTGCTCTAACCCTGCTCAGATATATAAGAAAGTCACTTCAGGAAAATTGCCTAATGCATTCTATGAGATCAAAGATTTGGAGGCCCAAAGATTTGTAAGAAAATGTTTGGAGAATGTTTCAAAGAGGCTGCCTGCTAGAGAGCTCTTGCTTGATCCATTTCTAGCACCTAATTCCAACAATAACAATGCCTCTTATAATGAAGACTTACTGTCTTCATCTCTATCTCCAAAGAAATCAATGGCAAGAAGAACGCACATGGTTATTTCTGGATCAATGAATCCCAAGGACGATTCGGTTTTTCTAAAAGTGCATATCAAAGTGAATAACGGTAAATCTAAGAATGTATATTTTGCATTCGACACCAAAAACGACACCGCAATCGACGTTGCGACTGAGATGGTTAAAGAAGTAGAAATTATTAGTGATTGGGATCCATTGGAGATAGCTGTGATGATAAAGAAGGAGATATTCACATTGATTCCAGATTGGGAGGAATGGAAGTTACCCAAAAACCACCATCAAGATAGCTTCACCTATGAACAAGACCACAAGGACGACGACGACAATGATGATGACGACGAAAACCATGAAATACCACATCCTTTTTATTATTGTTGCTCCTCTCCTGCCTCCTCCTCAAATTCTCTTTGGGGTTTCTACTCTTTAAAAGAGAGCATCAATCATCATTTTGGAGGAATGAAGGAAACTTCTACTACCACTGAATGGTTCCAAGAGGATGTTCTCAATAATATTGATGATGATACAAGTTCTAGTTGCTCTCTCAATTCCTTCAATTACTCTGATATAAGCTTTTACTCAAACAATGAAGATGAGTATGAATATGAATCAAATGTCAAAGGAAGTGAGCCTCAGTACATCTCAACAGCCAAGCAACCTACAAGATTTTGCCCAACCATGAAGATAGACACACACCCTTTGAGGCAAAAGGACACCAAAAAAATGATCGATCGAGAAATATTTGAGAGTCGATCTCGATTAAATAACTCGCATAAGCTCATGAGAGTGAAATCAATGGTGAACCTCCGTAGCGAGACGTTGCATCGGTCTTTAGTAGAGATGTTGTTGAAGAAGCGCTTGTTCAATACGGTGGGTGCAATGGAGAACATTGGATACCAAAAACCATAG 1809 39.86 MAQSIGYAETDPSGRYGRFREILGKGAMKTVYKGFDEMLGIEVAWNQIHLKDVFHSPQELQRLYSEIHLLKNLDHDSIIRFYTSWIDTHCRTFNFITEMFTSGTLREYRQKYRNVNIEAIKNWARQILQGLAYLHGHDPPVIHRDLKCDNVFINGHLGLVKIGDLGLATILHDSKYAYSVIGTPEFMAPELYDEEYNELVDVYSFGMCMIEMLTLEYPYSECSNPAQIYKKVTSGKLPNAFYEIKDLEAQRFVRKCLENVSKRLPARELLLDPFLAPNSNNNNASYNEDLLSSSLSPKKSMARRTHMVISGSMNPKDDSVFLKVHIKVNNGKSKNVYFAFDTKNDTAIDVATEMVKEVEIISDWDPLEIAVMIKKEIFTLIPDWEEWKLPKNHHQDSFTYEQDHKDDDDNDDDDENHEIPHPFYYCCSSPASSSNSLWGFYSLKESINHHFGGMKETSTTTEWFQEDVLNNIDDDTSSSCSLNSFNYSDISFYSNNEDEYEYESNVKGSEPQYISTAKQPTRFCPTMKIDTHPLRQKDTKKMIDREIFESRSRLNNSHKLMRVKSMVNLRSETLHRSLVEMLLKKRLFNTVGAMENIGYQKP 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20944269 20950572 + ClCG04G006400.2 Cla04g00650 270878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00650 602 SMART serkin_6 17 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00650 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Cla04g00650 602 ProSiteProfiles Protein kinase domain profile. 17 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00650 602 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK5-RELATED 3 602 - -
Cla04g00650 602 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 3 602 - -
Cla04g00650 602 SUPERFAMILY Protein kinase-like (PK-like) 19 446 IPR011009 -
Cla04g00650 602 CDD STKc_WNK 15 275 - -
Cla04g00650 602 Gene3D Phosphorylase Kinase; domain 1 3 98 - -
Cla04g00650 602 Gene3D Transferase(Phosphotransferase) domain 1 100 282 - -
Cla04g00650 602 Pfam Protein kinase domain 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01864 Cla-Chr2:33833122 Cla04g00650 Cla-Chr4:20944269 0 dispersed
Cla04g00650 Cla-Chr4:20944269 Cla06g00905 Cla-Chr6:14489112 4.72E-145 dispersed
Cla04g00650 Cla-Chr4:20944269 Cla02g01615 Cla-Chr2:30873725 1.77E-136 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80492 PF00069 Pkinase 1.10E-46 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00650 K08867 - csv:101207665 983.786